Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01464 ATGGGGAGAAGACCTGCAAGATGTTATCgtcaaatcaaaaacaaaccGTATCCCAAATCACGCTTCTGCCGTGGTGTTCCTGATTCCAAGATCAGAATTTATGATGttggaatgaagaagaaaggcGTTGATGAGTTTCCTTTCTGCGTCCACCTTGTTAgctgggaaaaagaaaatgtttcaaGTGAAGCCCTGGAAGCTGCTCGTATTGCATGCAACAAGTACATGGCCAAATATGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGGGTACATCCATTCCATGTCCTCAGGATCAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACGGGAATGAGGGGTGCCTTTGGAAAGCCTCAGGGCACTTGTGCAAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCACAGGAGGCCCTCCGCCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACCAAATTCAGCCGTACTGATTATGTGAAGTTCAAGGCAGAGAACAGGATTGTTCCGGACGGTGTAAATGCCAAGCTTCTTGGAGTTCATGGACCATTGGCTCATCGTCAACCCGGAAGAGCATTTATGCATGCTGCAACTGCTTA 665 0.4451 MGRRPARCYRQIKNKPYPKSRFCRGVPDSKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYVKFKAENRIVPDGVNAKLLGVHGPLAHRQPGRAFMHAATA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01464 221 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Bva12g01464 221 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Bva12g01464 221 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Bva12g01464 221 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Bva12g01464 221 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Bva12g01464 221 Gene3D Ribosomal protein L10e/L16 1 219 IPR036920 GO:0003735|GO:0005840|GO:0006412
Bva12g01464 221 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Bva12g01464 221 PANTHER 60S RIBOSOMAL PROTEIN L10 1 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
Bva12g01464 221 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01464 Bva-Chr12 12599625 12601609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01464 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.364 2.93e-143 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01464 K02866 - tcc:18591109 442.195