Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01453 ATGGAGAAAGAGTTGGTCGAATTGTACGAATCAGTGAAGAAGGCTGCGGATGCGGCGAGCTCCGGCGAAAGCGAACATGAAGAAAGTCGGTGCATAGATGCGCTCGAGCAGCTCAAGAAATTCCCTGTGAATTATCAAATTCTTGTCTCTACCCAGGTGGGGAAACGTCTTCGACATCTCACAAAACatccaaataagaaaattcGGACTTTCTCTGCTGACCTGATTGAGATGTGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAGAACGGGAGCTCAAATAATCATGCTGAGTCAACTAATGGGGAGACAGCTAAAACTGAGGAGGTTCAGAAGACACCTCAGCTGAAAGTTGAGAAGGCTTCCAAGGTTGAAACAGTCAAGTTTGAGAAAATTGATAGAAATGGTACATCAAGCTCAGGAAATgtaaaaacacaaaatgtGAACGTCAAAAGTGAGAAAGCTGATTCTGTGGCACGTGGCAATGTGGAAAAGATGGCTAAGGACGAGAAGCAAGCTTCAGGAGTGAAGAAAACATCATCCAGCTTGGCTGCTTCGGCTCCTCCAAAGATGAAATCTATGCTTAAAACTAATGACTCGGTACGAGACAAGATAAGGGAAATGCTCCACGATGCTTTCTCCCGGGTTCCAGGAGAGGCTGATGAAGAAATGATGGATCAAGTTAATGCATCTGATCCTATTCGAGTTGCGGTTGCTGTGGAGTCTGTATTGTTTGAAAAGTGGGGTCCGTCTAATGGGGCTCAAAAGGTTAAGTATAGGTCCTTAATGTTTAACCTTAAGGATCAAAATAACCCAGATTTCCGAAGAAAGGTCCTTACGGGAGTTGTTAAGCCAGAGTGGCTGCTCAACATGACCTCAGAAGAAATGGCCAgtgagagaaggaagaaggagaatgagcaaataaaacagaaaGCTTTATTTGAATGTGAGCGTGGATTGCAACCAAAAGCCACAACTGATCAATTTAAATGTGGCCGATGTGGTCAAAGGAAGACCACCTATTACCAAATTCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTTACTTGCGTAGTCTGTAACAACCGTTGGAAGTTCTGTTA 1115 0.4117 MEKELVELYESVKKAADAASSGESEHEESRCIDALEQLKKFPVNYQILVSTQVGKRLRHLTKHPNKKIRTFSADLIEMWKGIIIKETSKNKNGSSNNHAESTNGETAKTEEVQKTPQLKVEKASKVETVKFEKIDRNGTSSSGNVKTQNVNVKSEKADSVARGNVEKMAKDEKQASGVKKTSSSLAASAPPKMKSMLKTNDSVRDKIREMLHDAFSRVPGEADEEMMDQVNASDPIRVAVAVESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLTGVVKPEWLLNMTSEEMASERRKKENEQIKQKALFECERGLQPKATTDQFKCGRCGQRKTTYYQIQTRSADEPMTTYVTCVVCNNRWKFC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01453 371 MobiDBLite consensus disorder prediction 135 155 - -
Bva12g01453 371 SMART TFS2_5 8 85 IPR003617 GO:0005634
Bva12g01453 371 MobiDBLite consensus disorder prediction 88 121 - -
Bva12g01453 371 MobiDBLite consensus disorder prediction 135 195 - -
Bva12g01453 371 SUPERFAMILY Zinc beta-ribbon 310 369 - -
Bva12g01453 371 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Bva12g01453 371 MobiDBLite consensus disorder prediction 104 121 - -
Bva12g01453 371 Pfam Transcription factor S-II (TFIIS) 331 369 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bva12g01453 371 SMART Cys4_2 331 370 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bva12g01453 371 SMART mid_6 201 309 IPR003618 GO:0006351
Bva12g01453 371 Gene3D - 179 299 IPR036575 GO:0006351
Bva12g01453 371 TIGRFAM TFSII: transcription elongation factor S-II 14 371 IPR006289 GO:0003676|GO:0005634|GO:0006368
Bva12g01453 371 PIRSF TFIIS 2 371 IPR035100 -
Bva12g01453 371 CDD Zn-ribbon_TFIIS 324 370 - -
Bva12g01453 371 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 99 IPR035441 -
Bva12g01453 371 ProSiteProfiles TFIIS central domain profile. 203 326 IPR003618 GO:0006351
Bva12g01453 371 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 371 - -
Bva12g01453 371 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 371 - -
Bva12g01453 371 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3 97 IPR035441 -
Bva12g01453 371 CDD TFIIS_I 9 83 - -
Bva12g01453 371 Coils Coil 291 311 - -
Bva12g01453 371 MobiDBLite consensus disorder prediction 159 177 - -
Bva12g01453 371 Gene3D - 300 371 - -
Bva12g01453 371 SUPERFAMILY Elongation factor TFIIS domain 2 189 301 IPR036575 GO:0006351
Bva12g01453 371 ProSiteProfiles TFIIS N-terminal domain profile. 10 86 IPR017923 -
Bva12g01453 371 ProSitePatterns Zinc finger TFIIS-type signature. 333 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bva12g01453 371 MobiDBLite consensus disorder prediction 88 103 - -
Bva12g01453 371 Pfam Transcription factor S-II (TFIIS), central domain 199 317 IPR003618 GO:0006351
Bva12g01453 371 ProSiteProfiles Zinc finger TFIIS-type profile. 329 369 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01453 Bva-Chr12 12561047 12564045 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bva12g01453 TFIIS_M 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01453 K03145 - gmx:100811982 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01827 12 14884425 14887456 Bva12g01453 12 12561047 12564045 ECH
Bva12g01453 12 12561047 12564045 Bva12g01453 12 12561047 12564045 ECH