Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01444 ATGTCGTCAGAGGAAATTGGTCTGGTTCCTGACCAGAGGATCGAGAACGGTCTCAGCTCACCCCTTGTGTTCCAAGGCGACCCCTTGCGCTTTAATTGCGGTGCTCCCCAGCGTCGGGTTGGAGACCCGGGTCCGAAAACGAGGGAGCTTAGCGGTTTCCTTAAtgaaaaaatgtttgatttaGAGCGAGACCGGTTTTTCACATCTCCGGCCGCGGATTTCCGACGGAACGTTTATGGAAATATCTCGGACCGGCGGGACCCACCAGCGACACGGAATTGGAATGGGAATGGTAGCACCACAACTCCTAGTGGTGATGACTCGGACGGCGATGATGAGGAAGACGAGGATGAAGACGACGACGACGATGATGTTGAAGATGAAGCTGAAGTAGAGGAACTGGTTGGTGTCGATgatgggaaaaagaagaattccAACACAATCAATGACATTAACAATAGCAACAGCAACGGCAGTAACCTGGCTAGTATCGCAGATAGAATATCAAATGGGAAAGCTCAGCATCATTCATATgGATCCGGTAGAGAGGTGTTGAAGGATGGTAACGTCGGCCAATTGGTGCATAATATGAGGGCTGGTGTGAATGATGATCACCAGCAAGAAAGACTAGGCACGGAGGGGTCAGCTTCTATGCAAAAATCTATGGTGGAGGAGAATGGTTGTGGGTTTAGTGGAAGAAAGGATGTTTATTTAAGCGAGTCAGGGGAGTCTCTGAGGGCAATTCTTTCAGATCCTATTACGGGAGCTCTTATGGATGATGCAATGATATTGCCTTGTGGACATTCCTTTGGTGGAGGTGGAAAACAGTATGTTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCGTATCCGAGGAATCTATCTCTCCAAATCTATCACTTCGAGCTGCTGTGCAAGCATTCCGCCGTGAAGAGGAATCACAGTTTTACCGGccatcaaaaaaaagaagagatagaTTTGATCAGGGTGGTTATGGTGATTCAGCTGTTATGGAACCACCAAGAGGTAGAGGTGTTCAGTTTCCCTTTGCAGTGATGGACCGAGTTATCATAAAGGGAAACAAGAGGACACCACAGCGGTTTGTTGGACGGGAAGCTATTGTCACAACACAATGCTTGAATGGATGGTATGTGGTTAAGACATTGGACAATGCAGAGAGCGTAAAATTGCAATATCGCTCTCTTGCTAAGGTTTCAGATTACCCTTCAAAACCGGCCTCCGCCAAGATTGGTCCTAATTGGCTTTA 1271 0.4555 MSSEEIGLVPDQRIENGLSSPLVFQGDPLRFNCGAPQRRVGDPGPKTRELSGFLNEKMFDLERDRFFTSPAADFRRNVYGNISDRRDPPATRNWNGNGSTTTPSGDDSDGDDEEDEDEDDDDDDVEDEAEVEELVGVDDGKKKNSNTINDINNSNSNGSNLASIADRISNGKAQHHSYGSGREVLKDGNVGQLVHNMRAGVNDDHQQERLGTEGSASMQKSMVEENGCGFSGRKDVYLSESGESLRAILSDPITGALMDDAMILPCGHSFGGGGKQYVIRMKACCTCSQPVSEESISPNLSLRAAVQAFRREEESQFYRPSKKRRDRFDQGGYGDSAVMEPPRGRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDYPSKPASAKIGPNWL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01444 423 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 81 423 - -
Bva12g01444 423 MobiDBLite consensus disorder prediction 106 134 - -
Bva12g01444 423 ProSiteProfiles U-box domain profile. 244 316 IPR003613 GO:0004842|GO:0016567
Bva12g01444 423 SUPERFAMILY RING/U-box 243 317 - -
Bva12g01444 423 MobiDBLite consensus disorder prediction 88 105 - -
Bva12g01444 423 MobiDBLite consensus disorder prediction 146 162 - -
Bva12g01444 423 MobiDBLite consensus disorder prediction 79 162 - -
Bva12g01444 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 314 IPR013083 -
Bva12g01444 423 MobiDBLite consensus disorder prediction 319 339 - -
Bva12g01444 423 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 81 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01444 Bva-Chr12 12514544 12517842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01444 19 423 Plant U-box Gene Family AT5G05230 43.128 1.43e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01444 - - adu:107470194 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01444 12 12514544 12517842 Bva12g01444 12 12514544 12517842 ECH