Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01440 atggcTGATCTGCGATACCGACTTCACCGCCTTCTGCTTGACACAGATTCAACCTCAATCTCAACAGGTAATGCAAATAGGACAAGTAGGTTCTCAAGAGAGGCCAATTTTGACACCAACATGGTGATAATCTTAGCAGCTTTGCTTTGTGCATTGATATGTGCTCTGGGGCTAAATTCAATTGTGAGATGTGCTCTAAGATGCAGCCGTAGGTTTGCTTCTGAGACAGCAGAGGAGGTAGCTTCACGTTTAGCTGCTAAAGGCCTGAAGAAGAGTGCATTACGTCGGATCCCTATAGCTGTTTATGGTTCCTCAGGTACTAATTTTCCAGCCACAGATTGTCCCATTTGCCTTGGAGACTTTTTGGATGGGGAGAAAGTCAGAATTCTACCAAAATGCAACCATGGCTTCCATGTTTGGTGCATAGACACATGGCTTCTCTCACACTCATCTTGTCCAACTTGTAGACACTTTTTGCTTGAACATCCTGCAGCTACGCCTGAAGCAGCGGTTGCAGCTGTAGCCATGACAGCAGCTGCTGAAACTGGGACCAGGCATCATGTAGAAAATACCTCAGGAGGACATGAATCTGAGGCTGGATCTACAGCCGTGGAAGAGGTTTA 623 0.4591 MADLRYRLHRLLLDTDSTSISTGNANRTSRFSREANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFASETAEEVASRLAAKGLKKSALRRIPIAVYGSSGTNFPATDCPICLGDFLDGEKVRILPKCNHGFHVWCIDTWLLSHSSCPTCRHFLLEHPAATPEAAVAAVAMTAAAETGTRHHVENTSGGHESEAGSTAVEEV 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01440 207 MobiDBLite consensus disorder prediction 184 207 - -
Bva12g01440 207 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Bva12g01440 207 SUPERFAMILY RING/U-box 107 164 - -
Bva12g01440 207 SMART ring_2 114 155 IPR001841 -
Bva12g01440 207 Pfam Ring finger domain 113 156 IPR001841 -
Bva12g01440 207 PANTHER RING-H2 FINGER PROTEIN ATL74 9 175 - -
Bva12g01440 207 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 9 175 - -
Bva12g01440 207 CDD RING-H2_PA-TM-RING 113 156 - -
Bva12g01440 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 162 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01440 Bva-Chr12 12499437 12501460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01440 8 164 C3H Transcription Factor Family AT3G10910 58.434 9.05e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01440 - K19040 pvy:116129746 248.825