Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01417 ATGGGTTCGTTTCCAGCTAGTTTGGTGTGTTTGGCACAGGTGATGCTTGTGTTGGGAAGTGCCAATGCACAACTCTCTACCAATTTTTACTCAAGATCTTGCCCGAAACTTTTTCCCACTGTGATAACCACAGTTCATTCTGCTATAGTAAAGGAAGCCCGCATGGGTGCTTCTCTCCTTCGTTTGTTCTTCCACGATTGCTTTGTCAATGGATGTGATGGTTCAATTCTACTTGATGACACATCAAGCTTCAAGGGAGAGAAGAATGCAAACCCCAACAGGAACTCAGCTCGTGGATTTGAAGTGGTTGACAACATAAAGTCTGCCGTCGAGAAAGTGTGCCCTGGCGTTGTCTCCTGCGCTGATATCCTCGCCATCGCCGCCAGAGATTCTGTTCACattCTTGGAGGGCCTTCTTGGAATGTAAAACTTGGAAGAAGGGACGCTAGAACAGCCAGCCAGAGTGCTGCCAATAACGGTATCCCTCCACCAACTTCTAACCTTAACCAGCTCATTTCCAGGTTCAATGCTCTTGGCCTCTCTACCAAGGACTTGGTTGCCTTGTCTGggGCCCATACAATCGGACAAGCAAGGTGCACAAATTTCAGAGCCCACATTTACAACGACAGCAACATAGACAAGTCATTTGCGAGGACAAGGCAATCAAGCTGCCCAAGAGCCTCGGGTTCGGGAGACAACAACCTAGCACCACTCGATCTTCAGACACCCACTGCTTTTGACAACAACTACTTCAAGAACCTCGTACAGAAGAAGGGTCTTCTCCACTCCGACCAGGAGCTCTTCAACGGTGGATCCACCGATTCCACCGTTCGTGGGTATAGCAACAATCCACACACTTTTGCCGCTGACTTTGTCAACGCCATGATCAAGATGGGAGATATCTCTCCCCTCACTGGCTCCAAAGGAGAGATCAGGAACAACTGCAGGAGGGTCAACTG 959 0.488 MGSFPASLVCLAQVMLVLGSANAQLSTNFYSRSCPKLFPTVITTVHSAIVKEARMGASLLRLFFHDCFVNGCDGSILLDDTSSFKGEKNANPNRNSARGFEVVDNIKSAVEKVCPGVVSCADILAIAARDSVHILGGPSWNVKLGRRDARTASQSAANNGIPPPTSNLNQLISRFNALGLSTKDLVALSGAHTIGQARCTNFRAHIYNDSNIDKSFARTRQSSCPRASGSGDNNLAPLDLQTPTAFDNNYFKNLVQKKGLLHSDQELFNGGSTDSTVRGYSNNPHTFAADFVNAMIKMGDISPLTGSKGEIRNNCRRVN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01417 319 CDD secretory_peroxidase 24 318 IPR033905 GO:0004601|GO:0042744
Bva12g01417 319 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 Gene3D - 28 319 - -
Bva12g01417 319 PANTHER PEROXIDASE 9 319 - -
Bva12g01417 319 Pfam Peroxidase 44 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 ProSiteProfiles Plant heme peroxidase family profile. 24 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PANTHER PEROXIDASE 72-RELATED 9 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 SUPERFAMILY Heme-dependent peroxidases 24 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 Gene3D Peroxidase, domain 2 162 298 - -
Bva12g01417 319 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Bva12g01417 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Bva12g01417 319 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Bva12g01417 319 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01417 Bva-Chr12 12402778 12404307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01417 23 319 Peroxidase AT5G05340 77.778 2.39e-174 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01417 K00430 - gmx:100803637 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01786 12 14688498 14689925 Bva12g01417 12 12402778 12404307 ECH
Bva12g01417 12 12402778 12404307 Bva12g01417 12 12402778 12404307 ECH