Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01398 ATGGTAATGGAGAGCAGAAATCTGATTCCCAACCGTTTTTACCAAAACCCTTATCAGATTTTTCAACTTAAGATGAGGAAAGCAGCAGATTGGCACCATATTTTGggtaagaagaaagagaaatggaaGAATCATTCTAAAACCCATAACCCGTTGAATTGGTTCCTCTGGGTTCAGTTTTTCTGGTTTCTTCTGCCACTCCTATGTGTGAAGCCAGTTTTGTGTGAAGGTGAGCGTTGGGATGGAGTAGTTGTCACAGAATCTAATTTCTTAGCCCTTCAAGCATTCAAGCAAGAGTTGGTTGATCCCAAAGGCTTCTTGAAGAGCTGGAATGACAGTGGCTATGGAGCTTGTTCTGGTGGTTGGGTTGGGATCAAGTGTGCTCAGGGACAGGTTATTGTGATCCAGCTTCCATGGAAGGGATTGCGGGGCCACATAACAGAGAGGATTGGCCAACTTCAAGGGCTTCGAAAGCTAAGTCTTCATGACAATCAAATTGGCGGTTCAATCCCTTCAGCATTGGGAATTCTTCCTAACCTAAGAGGGGTTCAGCTATTCAATAATAGGCTAACAGGTTCAATCCCTCCTTCATTAGGTTTTTGCCCACTGCTTCAGTCTCTAGACCTTAGTAACAATTTGCTTACAGGGAGAATCCCTGATAGCCTTGGAAACATGACTAAGCTTTATTGGCTTAATTTGAGTTTCAATTCCTTCTCTGGTCCCATACCTGCTAGTCTCACTCACTCTGCTTCTCTCACATTCCTTTCTCTTCAACACAATAATCTCTCTGGTTCTATCCCATACTCATGGGGTGGAGctctaaaaaataacttctttagGCTTCAAAGTTTGATCCTTGATCATAACTTCTTCTCTGGAAGCATTCCTGCTTCTTTTGGCAATCTAAGAGAACTCAAAGAGATTTCCCTTAGCCATAATCAGTTTAGCGGAGCTATACCAATTGAAATAGGGAGGCTTTCTAGGCTTAGAACATTGGATTTTTGTAATAATGCATTGAATGGAAGCTTGCCTACTACTCTCTCTAACATATCCTCACTGACCTTGTTGAATGTAGAGAACAACCATCTTGACAACCAAATCCCAGAATCACTAGGCAGATTTCACAACCTTTCTGTGCTAAACTTAAGCAAAAACCGATTTAAGGGTCCAATTCCTGCTAGTATTGGAAACATTTCTACCCTTACCCAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCATATTCCATAGACAATTTACGTAGTCTTAGCTTTTTCAATGTTTCTTTCAATAACCTCTCTGGTCCTGTTCCCACTTTACTCTCCCAgaaatttaattcaagttCGTTTGTGGGAAACATTCAATTATGTGGGTATAGTCCTTCAACCCCGTGTCCTTTAGAAGCATCTCCATATCCTTCTCCTCAAGTTTCAAAAGCTCATCATCATAAGAAACTAAGTACCAAAGACAAAATTCTCATAGCAGCAGGAGCTCTCCTTGTAGTTTTGGTAGTACTCTGTTGCATGCTGCTGTTCTGCTTGATAAGGAAAAGGGCAGTGTCAAAAGCACAGGATGGCCAGGGCACAGCAAGAGCTGCAGCTGCCAGAACAGAAAAAGGGGTCCCTCCGGTTGCAGGTGAAGTTGAAACGGGCGGTGGGGCTGGAGGAAAGCTAGTCCATTTTGATGGGCCAGTGGCTTTCACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGAAAAGAGCACCTATGGAACTGTTTATAAGGCTACCTTGGAGGATGGCAGCCAAGTTGCAGTGAAGAGATTGAGGGAAAAAATCACCAAAGGCCAGAGAGAATTTGAATCAGAGGTTAGTGTTATAGGGAAAATTCGACACCCAAATCTTTTGGCAATGAGGGCCTATTACTTGGGACCCAAGGGAGAAAAGCTTCTGGTTTTCGAGTACATGCCTCAAGGAAGTCTTGCTTCTTTTCTACATGCTAGAGGGCCTGAAACAGTCATCGATTGGCCAACAAGGATGAAAATAGCACAGGGCATGGCTCGTGGCTTGTTCTACCTTCATTCCCATGAGAATATTATTCACGGGAACCTGACATCCAGCAACGTTCTTCTTGATGAGAATACAAATGCTAAAATTGCAGATTATGGTCTTCCACTGCTAATGACAACTGCTATTTCTAATGTGATTGCCGCTGCTGGAGCATTAGGGTACAGAGCACCTGAGCTCTCCAAGCTCAAGAAAGCCAACACAAAAACTGATGTCTACAGCCTTGGTGTTATCTTGTTGGAACTCCTAACAGGGAAATCACCTAGTGAGCCCACGAAGGGTATGGATTTACCTCAGTGGGTTGCCTCAATTGTAAAAGAAGAGTGGACGAATGAGGTTTTCGACGTGGAGTTGATGAGAGATGCATCAACGATTGGCGACGAATTGCTCAACACATTGAAGCTGGCTTTGCATTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCAACAAATAATCCAGCAGCTAGAAGAAATTAGATCAGAGAGATCAATGAGTTCTGGTGATGATTTTGCCTTGCCCTCAACCAGTGATTA 2597 0.4243 MVMESRNLIPNRFYQNPYQIFQLKMRKAADWHHILGKKKEKWKNHSKTHNPLNWFLWVQFFWFLLPLLCVKPVLCEGERWDGVVVTESNFLALQAFKQELVDPKGFLKSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLRGHITERIGQLQGLRKLSLHDNQIGGSIPSALGILPNLRGVQLFNNRLTGSIPPSLGFCPLLQSLDLSNNLLTGRIPDSLGNMTKLYWLNLSFNSFSGPIPASLTHSASLTFLSLQHNNLSGSIPYSWGGALKNNFFRLQSLILDHNFFSGSIPASFGNLRELKEISLSHNQFSGAIPIEIGRLSRLRTLDFCNNALNGSLPTTLSNISSLTLLNVENNHLDNQIPESLGRFHNLSVLNLSKNRFKGPIPASIGNISTLTQLDLSLNNLSGEIPYSIDNLRSLSFFNVSFNNLSGPVPTLLSQKFNSSSFVGNIQLCGYSPSTPCPLEASPYPSPQVSKAHHHKKLSTKDKILIAAGALLVVLVVLCCMLLFCLIRKRAVSKAQDGQGTARAAAARTEKGVPPVAGEVETGGGAGGKLVHFDGPVAFTADDLLCATAEIMEKSTYGTVYKATLEDGSQVAVKRLREKITKGQREFESEVSVIGKIRHPNLLAMRAYYLGPKGEKLLVFEYMPQGSLASFLHARGPETVIDWPTRMKIAQGMARGLFYLHSHENIIHGNLTSSNVLLDENTNAKIADYGLPLLMTTAISNVIAAAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKSPSEPTKGMDLPQWVASIVKEEWTNEVFDVELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQIIQQLEEIRSERSMSSGDDFALPSTSD 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01398 865 Gene3D Transferase(Phosphotransferase) domain 1 654 859 - -
Bva12g01398 865 Pfam Protein tyrosine and serine/threonine kinase 582 843 IPR001245 GO:0004672|GO:0006468
Bva12g01398 865 MobiDBLite consensus disorder prediction 845 865 - -
Bva12g01398 865 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Bva12g01398 865 Pfam Leucine rich repeat 280 333 IPR001611 GO:0005515
Bva12g01398 865 Gene3D Ribonuclease Inhibitor 89 199 IPR032675 -
Bva12g01398 865 Gene3D Ribonuclease Inhibitor 277 470 IPR032675 -
Bva12g01398 865 SUPERFAMILY Protein kinase-like (PK-like) 581 847 IPR011009 -
Bva12g01398 865 CDD STKc_IRAK 584 846 - -
Bva12g01398 865 Pfam Leucine rich repeat N-terminal domain 91 127 IPR013210 -
Bva12g01398 865 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 16 852 - -
Bva12g01398 865 Gene3D Phosphorylase Kinase; domain 1 583 653 - -
Bva12g01398 865 ProSiteProfiles Protein kinase domain profile. 576 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01398 865 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 16 852 - -
Bva12g01398 865 SUPERFAMILY L domain-like 126 459 - -
Bva12g01398 865 Gene3D Ribonuclease Inhibitor 200 276 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01398 Bva-Chr12 12303387 12308701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01398 80 847 Receptor kinase-like Gene Family AT3G51740 65.206 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Bva12g01398 PK_Tyr_Ser-Thr 9.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01398 - - aprc:113851294 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01755 12 14556881 14560122 Bva12g01398 12 12303387 12308701 ECH
Bva12g01398 12 12303387 12308701 Bva12g01398 12 12303387 12308701 ECH