Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01395 ATGGCAATGGGTGCCTATGATCAAGGTTCTAACATCACTTCTATGGGGAAGAAGAGAAGTCGGAGTAGACGGAACGGATCTAATTTAGCTGAGACTCTTGCAAAGTGGAAAGAGTATAATAATCAACTTGATTCTTCCACGAATGAGAGTAAACCAACCAGCAGAGCCCCTGGCAAGGGTTCAAAGAAAGGATGCATGAAAGGTAAAGGAGGACCTGAAAACTCTCGATGCAGCTTTAGAGGTGTTAGGCAAAGGACGTGGGGCAAGTGGGTCGCTGAAATTCGGGAGCCAAACAGAGGAAGTAGGCTTTGGTTGGGTACATTCTCTAATGCAGTTGAAGCTGCCCTTGCATATGATGAAGCTGCAAGAGCCATGTATGGTCCTTGTGCCCGTCTCAATTTTCCTCACGTCTCAGACCATAATACTTATAAGGAATCATCGAAGAGCTTTTCCCCTTCTACAACTTTGTCATGTTGCTCAGCGGTAACTTCTGCAGGTTCTGACACAAGTACTGTATTAAACCAATCTGAACTCTCTGCAACTGaggattttaaatttgaaactgAACCAATAAATGCTGATAATAGAGACCATACTCAACATGAAGCTGCTACACCAATTAGCAGAGTGAAGGAAGAACCTAAGGATGAATCTGCTGATAACATAGAAATTGACAGCTGGGATAAAAAAGATTTGGTAAGAGAAGAAGCTTGTACAGTCAAACAGGTTGCAGAAGATGAACATCAAGATCAGATGGACTATTCTTGGATGGATAGTGATCTCTTGGAGGGTTTTTCTATGGATGAGATGTTTAATGTGGATGAGCTTTTGGGGAAGCTAGAGGATCCAATTGGTGAATCTGGGATGTTgcaagattttgattttggtccAATTGATTTTGCTGGTGATGGTGGTAATCTTCAAAGTGAGATACCATCAAGCTTGTCCTATCAGCTCCAAAATCCAGATGCCAAGCTGCTTGGAAGTCTGCACCATATGGAAGAGACACCAACAGGTGTTGATTATGGttatgatttcttaaaaacaGAACCAGAGGATAACTATGGTACAGGAGAAGAGCAGCGATATCTTGATTTTGGATTATCCGATATGTG 1115 0.4063 MAMGAYDQGSNITSMGKKRSRSRRNGSNLAETLAKWKEYNNQLDSSTNESKPTSRAPGKGSKKGCMKGKGGPENSRCSFRGVRQRTWGKWVAEIREPNRGSRLWLGTFSNAVEAALAYDEAARAMYGPCARLNFPHVSDHNTYKESSKSFSPSTTLSCCSAVTSAGSDTSTVLNQSELSATEDFKFETEPINADNRDHTQHEAATPISRVKEEPKDESADNIEIDSWDKKDLVREEACTVKQVAEDEHQDQMDYSWMDSDLLEGFSMDEMFNVDELLGKLEDPIGESGMLQDFDFGPIDFAGDGGNLQSEIPSSLSYQLQNPDAKLLGSLHHMEETPTGVDYGYDFLKTEPEDNYGTGEEQRYLDFGLSDM 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01395 371 MobiDBLite consensus disorder prediction 196 219 - -
Bva12g01395 371 CDD AP2 77 137 IPR001471 GO:0003700|GO:0006355
Bva12g01395 371 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 351 - -
Bva12g01395 371 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
Bva12g01395 371 MobiDBLite consensus disorder prediction 1 78 - -
Bva12g01395 371 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 351 - -
Bva12g01395 371 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Bva12g01395 371 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Bva12g01395 371 SMART rav1_2 78 141 IPR001471 GO:0003700|GO:0006355
Bva12g01395 371 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Bva12g01395 371 ProSiteProfiles AP2/ERF domain profile. 78 135 IPR001471 GO:0003700|GO:0006355
Bva12g01395 371 MobiDBLite consensus disorder prediction 26 55 - -
Bva12g01395 371 Gene3D AP2/ERF domain 78 137 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01395 Bva-Chr12 12286595 12288886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01395 19 371 AP2-EREBP Transcription Factor Family AT2G40340 37.297 1.71e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva12g01395 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01395 - K09286 gmx:100800134 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01395 12 12286595 12288886 Bva12g01395 12 12286595 12288886 ECH