Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01394 ATgtctagaaaaagaaatttacacCAGTCAAAGCATCCTTTTGATTCTTACCCCTTTGAGGCATGCCTTGATGGCTCATGGCAAGCCGTGGAACTCTTAAAAATTGAGAACGGAACTATGGCCATGCATTTTATGGATAAACGCTGTGTAACTTTGGAGAAAGGCCCCTTTTATGACCTTCGGACAAGGTCAAGGAAAGCTACTTTAAGAGATTGCTCCTGCATTTTGAGACCTGGGATTGACGTATGTGTGCTATCCACCTctgcaaatgaaaataatgtcaATCAGGTGTGGGCTGATGCTAGAATAAGTTCTATACAGAGAAGGCCTCATGATTCTGAGTGCTCATGTCAGTTTTATGTCAACTTCTATGTTAACCAAGGTTCTCTTGGAACAGAAATAAAAACTCTCACTAAAGAGATTAAGGTAAttggaataaataaaatttgcataCTCCAAAGGCTTCAACGTAACCCTTGTGAAGATCAGCACTATCGATGGGACTCATCTGAGGATTCCTCTGTATTATCAGAAACTAAATTGCTTTTAGGAAAATTTTTAGCTGACATTTCATGGTTAATTGTTGCATCAGCTGTAAAGCGGGTTATATTCTGTGTCAGATCTCTGGAAAACAAGATTGTGTATCAAATTCTGGGAGGTGATAATGATGGCTCTtcattaaaatctttaaatgctttaaatttcaaagttgacaaagaCATATTAGTACCATTTGTTTCTCAAGTTGCTTCATCTGACACCAATAGTGAAAGACATGTACATGACTCTGATGAAGGTGACTTGTCATCATATTATAATTCTGAGGGCTTACGACGTTCCAAGCGTCGGAATGTACAACCTGAGCGTTACCTTGGCTGTGATGTTGCTCCGGAATTAGATGTTGGTTTTGTTAGAACCAGGCCATACAAGATGACAGATCCAGGGAGAGATGAAGACTATGACGATGAAATGTCTATACCATTGTCGTGCCTTTTTGGTTTGCAAGTACGTTGTCCAGGAGAGCAAGTTGGACGTAGTGAAAAGGTCAATAAGATGAATAGACCTGAAGAGCTTCGAGTGTACCGAAGGAAGGGTAAATCCAGGAAGGTAAAATTGGGTGATGCCAGTCAGATTCAGTATGAATATCAAACTAAACTTGCTATTGTTCCTGTGCCTGATGAAAATTATCCTGCACCCCTTGAGTATTATCATCTTGATGCCAAAGTTACAAGTAATTATGCTGGACATGAAAGTGGTGAAGTTTCTTCCAGACATTATTACCTAACTGATACCCCTAAACAGCGGAAGGAGAAAATTAATCTGCTAACTTTTGAACCCCATCATTCCCCAGATAAGACTCCCGATCTTGAATACCATCGAAATGAAATTGATCTGACTTACACCCGATGTTATAGTTATGGCACCTCTAAAGTGCAGAGGAAGAAAGTACATGGTCTAGAAGATATGGATCTTGAAAATACGTGGGAAAAGATGCATTTCGGTAAAGTAGTTCCTGGGAAAAAATATCGTTCCACATGTTCAAGAAGTAAAGGTgatgaaggaaaatattatagaGACAGAACCTTAAGTGCAGGTGCATTCAAGGAATTGATAGATTCATACTTAAAACATATGAATAAAACACAAACTAAAGAAGAGGCGCCTATTACTGACCAGTGGAAACAAATCAAGGCAAAAAACATCTTTGAGCAAAATAGTGAAACCGTGATACCGCAGAAGGAAGTTGAGGAAGAAATGTCTGAGATGGATATGTTATGGAGAGAAATGGAAGTTTCATTGGCATCAACTTATCTTGAAGACACAGAGGAGGCTTCAAATAGTGGTTTTTTCGCTGAGGCTGCAAAGGAACCTAGTAAGCTTTGTCGTCATGATTATAGAGTGGATGATGAAATTGGAATTCATTGCCGTATATGTGGCTTCGTGAGCactgagataaaatatattttaccacCTCTTATGCAATACTCAGGGTGGCATCAAGAGGAGAAGAAGGACGTTGTAGAAGAGTCCGAACCAAAAGATGATGAAGACAACGCTTTCCATCTTTTGTCTACTCACGCTTCTCCTGATGAGCCTGTTTCTGAAGAAAGTGATAATGTATGGGCATTGATTCCTGATCTTAGGAAAAAGTTGCATGTCCACCAGAAAAAAGCATTTGAGTTTCTTTGGAAAAACATGGCAGGGTCTATGGAACCAGCACATATGGCAGCAACATCCAAAAGAACAGGTGGTTGTGTAATATCTCATGCTCCTGGAGCTGGGAAAACTTTTCTCATTATTGCATTTCTTGTTAGCTACTTGAAGTTGTTCCCAGGGAAGCGACCTCTTGTTCTTGCTCCAAAGACAACACTTTATACTTGGTATAAAGAATTCATAAAATGGGAAATTCCTTTACCGGTGTATCTGATTCATGGTCGTAGAACCTACAGAGTGTTCAATCAGAAGGAAATGTATTTCCCTGGTGTTCCAAAGCCCACCGAAGATGTCAAGCATGTTTTGGATTGCCTCGAAAAGATACAGAAGTGGCATGCGCACCCAAGTATTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGAGAGAGGATGCAAAGTATTCACACAGAAGGTATATGGCTAAAGTGTTGAGGGAAAGTCCTGGTTTGTTGGTACTGGATGAAGGACACAATCCTAGAAGCACGAAATCGAGGTTGAGGAAAGTTTTAATGAAAGTGGAGACAGAATCGAGAATATTACTCTCAGGCACATTGTTTCAGAACAATTTCTGTGAGTATTTTAACACACTCTGCTTGGCACGACCCAAATTTGCTTACGAAGTGCTCAAAGAATTGGACCCAAAATACAAGAGGAAAAAGAGAGTTGCAGAAAAGGCACGACATTTAATAGAATCACGTGCAAGAAAATTCTTCTTAGATAATATTGCAAAGAAAATTGACTCTGATAAAGGCAAAGAAAGGAAGCAGGGTCTGAAGATGttgaaaaaaatcacaaatgaaTTTATTGATGTTTATGAAGGCGGAGGTTCTGACACTCTTCCTGGCTTACAAATTTATACATTGCTAATGAATACTACTGATATACAACATAATATATTGTGCAGACTTGGAAAGAGAATGGCTGCATGCAAGGGATATCCTCTTGAGTTGGAGCTTATGATAACCCTTGGATCAATACATCCTTGGTTAATCAAATCAGCTGTTTGTGCTGATAGGTTTTTCAGTTTGGAAGAATTGAATGAGCTTGACAAATACAAGTTTGATTTAAAGATGggaacaaaagtaaaatttgttttgagcCTTGTGTATCGCGTAGTCAGGAAGGAGAAGGTGCTTATCTTTTGCCACAACATTGCACCTGTAAGActctttttagaattatttgagAAGTTCTTTGGTTGGCAGAAAGGTCGAGAAGTGTTGGTGATAACCGGGGAACTAGAGCTCTTTGAAAGGGGGAGAGTGATGGATCGGTTTGAGGAGCCTGTTGGAACATCAAAGGTACTGCTTGCTTCAATTTCGGCTTGTGCTGAAGGAATTAGTTTGACAGCAGCTTCTCGGGTGATTTTGTTGGACTCAGAATGGAATCCATCAAAAACAAAGCAGGCTATTGCACGAGCTTTTCGTCCTGGTCAGCAGAAGATGGTTTATGTATATCAGCTTTTAGCTGCCAACACGTTGGAGGAAGATAAGTATAGAAGAACCACTTGGAAAGAGTGGGTTTCGAGCATGATTTTCAGTGAGGATTTCGTGGAGGACCCATCTAAATGGCAAGCTGAGAAAATTGAAGACGATATACTGCGGGAAATGGTCGAGGAGGATAGGTCTAAATCGTTCCATATGATAATGAAGAATGAAAAGGCTTCAACAAATTG 3893 0.3807 MSRKRNLHQSKHPFDSYPFEACLDGSWQAVELLKIENGTMAMHFMDKRCVTLEKGPFYDLRTRSRKATLRDCSCILRPGIDVCVLSTSANENNVNQVWADARISSIQRRPHDSECSCQFYVNFYVNQGSLGTEIKTLTKEIKVIGINKICILQRLQRNPCEDQHYRWDSSEDSSVLSETKLLLGKFLADISWLIVASAVKRVIFCVRSLENKIVYQILGGDNDGSSLKSLNALNFKVDKDILVPFVSQVASSDTNSERHVHDSDEGDLSSYYNSEGLRRSKRRNVQPERYLGCDVAPELDVGFVRTRPYKMTDPGRDEDYDDEMSIPLSCLFGLQVRCPGEQVGRSEKVNKMNRPEELRVYRRKGKSRKVKLGDASQIQYEYQTKLAIVPVPDENYPAPLEYYHLDAKVTSNYAGHESGEVSSRHYYLTDTPKQRKEKINLLTFEPHHSPDKTPDLEYHRNEIDLTYTRCYSYGTSKVQRKKVHGLEDMDLENTWEKMHFGKVVPGKKYRSTCSRSKGDEGKYYRDRTLSAGAFKELIDSYLKHMNKTQTKEEAPITDQWKQIKAKNIFEQNSETVIPQKEVEEEMSEMDMLWREMEVSLASTYLEDTEEASNSGFFAEAAKEPSKLCRHDYRVDDEIGIHCRICGFVSTEIKYILPPLMQYSGWHQEEKKDVVEESEPKDDEDNAFHLLSTHASPDEPVSEESDNVWALIPDLRKKLHVHQKKAFEFLWKNMAGSMEPAHMAATSKRTGGCVISHAPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPLPVYLIHGRRTYRVFNQKEMYFPGVPKPTEDVKHVLDCLEKIQKWHAHPSILVMGYTSFLTLMREDAKYSHRRYMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVETESRILLSGTLFQNNFCEYFNTLCLARPKFAYEVLKELDPKYKRKKRVAEKARHLIESRARKFFLDNIAKKIDSDKGKERKQGLKMLKKITNEFIDVYEGGGSDTLPGLQIYTLLMNTTDIQHNILCRLGKRMAACKGYPLELELMITLGSIHPWLIKSAVCADRFFSLEELNELDKYKFDLKMGTKVKFVLSLVYRVVRKEKVLIFCHNIAPVRLFLELFEKFFGWQKGREVLVITGELELFERGRVMDRFEEPVGTSKVLLASISACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLAANTLEEDKYRRTTWKEWVSSMIFSEDFVEDPSKWQAEKIEDDILREMVEEDRSKSFHMIMKNEKASTN 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01394 1297 SMART helicmild6 1128 1217 IPR001650 -
Bva12g01394 1297 Gene3D - 691 984 IPR038718 -
Bva12g01394 1297 MobiDBLite consensus disorder prediction 254 273 - -
Bva12g01394 1297 Gene3D - 1025 1297 IPR027417 -
Bva12g01394 1297 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 743 942 IPR014001 -
Bva12g01394 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 955 IPR027417 -
Bva12g01394 1297 CDD SF2_C_SNF 1092 1228 - -
Bva12g01394 1297 Pfam SNF2-related domain 715 970 IPR000330 GO:0005524|GO:0140658
Bva12g01394 1297 Pfam Helicase conserved C-terminal domain 1100 1216 IPR001650 -
Bva12g01394 1297 CDD DEXHc_ATRX-like 718 966 - -
Bva12g01394 1297 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1296 - -
Bva12g01394 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1019 1280 IPR027417 -
Bva12g01394 1297 SMART ultradead3 714 958 IPR014001 -
Bva12g01394 1297 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1296 IPR044567 GO:0080188
Bva12g01394 1297 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1104 1264 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01394 Bva-Chr12 12277279 12284755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01394 1143 1235 RAD5 or RAD16-like Gene Family AT5G05130 41.489 2.63e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva12g01394 SNF2_N 1e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01394 K10875 - gmx:100811703 1719.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01394 12 12277279 12284755 Bva12g01394 12 12277279 12284755 ECH