Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01390 ATGGATTCCGACTTCCCCAACAAAGCTTTAACAGCTACGCGCTTTTCTGAGCTGAACCCTCCCCTCTCCGAACCGGTTCTCAAGGCACTATCAGAGTCTGGGTTCGAGTTCTGCACACCTGTTCAAGCCGCCACAATACCTTTGCTATGCAGTTTCAGGGACGTTGCTGTCGACGCTGCCACCGGTTCGGGCAAGACTCTGGCATTTGTAGTTCCACTTGTTGAGATTCTCCGCCGGTCATCTTCTCATTCTAAACCTCACCAGGTACTTGGAATAATTATATCTCCTACGAGGGAATTGTCTTCCCAAATATACCATGTTGCTCAACCTTTCATTTCGACATTATCGAATATGACATCCGTGCTTCTCGTTGGCGGAGTAGAAGTCAAAGCAGAcatgaagaaaatagaggAAGAGGGAGCAAATATATTGATTGGAACACCTGGGCGGCTATATGACATAATGGATCGGATGGATGTCCTGGACTTTAAAAGCCTGGAGattttgattttagatGAGGCTGACAGACTTTTAGATATGGGATTCCAGAAGCAGATAACGTCAATCATATGCCGCTTACCAAAGCTTCGTAGAACTGGTATTTTTTCAGCTACTCAAACTGAGGCCGTTGAAGAACTTTCTAAAGCAGGATTAAGGAACCCTGTGAGGGTTGAAGTTCGGGCAGAAGCAAAACCATCAACTGATGCTGTATCATCACAACAACTAGCCTCTTCAAAGACGCCTTCAGGACTTCACATCGAGTACATTGAATGTGAGGCAGACAAGAAACCATCTCAGCTTATAGATATACTTATTAAGAACcgctcaaaaaaaattataatATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGCCCTTACTCGCCTCTCTGTTTTAAAAGGTTTCTCTTTGATTCCCCTTCATGGAAAGATGAAGCAGACTGTCAGGGAGAAAGCACTTGCTTCATTCACGTCTCTTTCAAATGGAATTCTTTTGTGTACTGATGTTGCCGCCCGTGGACTTGACATACCAGGTGTTGATTGTGTAGTGCAGTATGATCCCCCTCAAGATCCAAACGTTTTCATACACAGAGTTGGCCGAACTGCTCGGCTGGGTAAAGAAGGACATGCTATTGTCTTCTTATTGCCGAAGGAGGAATCTTATGTAGAATTCCTGCGCATAAGAAGGGTTCCTCTTCAAGAGAGGAGATGCTCTGATGATGGGTCTGATGTTGTTCCTCAGATTCGTGAAGCTGCAAAAAAAGATCGTGATGTCATGGAGAAAGGACTCAGGGCATTTGTTTCCTATGTCCGTGCATATAAAGAGCACCACTgctcatatatttttagGTGGAAAGAACTTGAAATTGGTAAGTTGGCTATGGGATACGGATTATTGCAACTTCCGTCAATGCCAGAGGTAAAACACCACTCACTTTCTACTGAGGGGTTTGTACCAGTTGAAGATATCAATTTGGAGGACATAAAGTACAGGGATAAATATCGTgagaaacaaaggaagaagaatctgcaagcaaagaaagaagccAAAGAGAAACAGGCAAAAACTCAAAAGCCCAGCAAAAACCCAATTGCAGCTGCTACGAGGAAGAAAACAGCCAAACAGAGGCGTGCTCAGCAGACAGTAGAAGATGAGGATGAGTTAATGCGTGAATACCGTttgttgaagaaattgaagaaaggaACTATTGATGAAAGCGAATATGCAAAGTTAACAGGCACTGAGGAATTACTTTG 1766 0.41 MDSDFPNKALTATRFSELNPPLSEPVLKALSESGFEFCTPVQAATIPLLCSFRDVAVDAATGSGKTLAFVVPLVEILRRSSSHSKPHQVLGIIISPTRELSSQIYHVAQPFISTLSNMTSVLLVGGVEVKADMKKIEEEGANILIGTPGRLYDIMDRMDVLDFKSLEKQITSIICRLPKLRRTGIFSATQTEAVEELSKAGLRNPVRVEVRAEAKPSTDAVSSQQLASSKTPSGLHIEYIECEADKKPSQLIDILIKNRSKKIIIYFMTCACVDYWGVALTRLSVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCVVQYDPPQDPNVFIHRVGRTARLGKEGHAIVFLLPKEESYVEFLRIRRVPLQERRCSDDGSDVVPQIREAAKKDRDVMEKGLRAFVSYVRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKHHSLSTEGFVPVEDINLEDIKYRDKYREKQRKKNLQAKKEAKEKQAKTQKPSKNPIAAATRKKTAKQRRAQQTVEDEDELMREYRLLKKLKKGTIDESEYAKLTGTEELL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01390 572 Coils Coil 487 509 - -
Bva12g01390 572 MobiDBLite consensus disorder prediction 493 511 - -
Bva12g01390 572 Pfam DEAD/DEAH box helicase 39 172 IPR011545 GO:0003676|GO:0005524
Bva12g01390 572 CDD DEADc_DDX55 26 208 - -
Bva12g01390 572 CDD SF2_C_DEAD 238 368 - -
Bva12g01390 572 Gene3D - 3 211 IPR027417 -
Bva12g01390 572 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 570 - -
Bva12g01390 572 PANTHER RNA HELICASE 25 570 - -
Bva12g01390 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 208 IPR014001 -
Bva12g01390 572 Pfam Helicase conserved C-terminal domain 247 359 IPR001650 -
Bva12g01390 572 Gene3D - 237 471 IPR027417 -
Bva12g01390 572 SMART DUF4217_3 397 460 IPR025313 -
Bva12g01390 572 Pfam Domain of unknown function (DUF4217) 400 458 IPR025313 -
Bva12g01390 572 SMART helicmild6 274 359 IPR001650 -
Bva12g01390 572 MobiDBLite consensus disorder prediction 493 540 - -
Bva12g01390 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 250 406 IPR001650 -
Bva12g01390 572 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Bva12g01390 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 378 IPR027417 -
Bva12g01390 572 SMART ultradead3 34 238 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01390 Bva-Chr12 12255123 12259492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01390 17 373 Eukaryotic Initiation Factors Gene Family AT1G72730 28.418 2.57e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01390 K14809 - gmx:100801482 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01390 12 12255123 12259492 Bva12g01390 12 12255123 12259492 ECH