Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01388 ATGGGTGGGAATTCCCCATGCGCTTCGTGCAAGTTACTACGACGTCGTTGTGCCAAGGACTGCATCTTCGCCCCTTATTTCCCTTCCGAGGACCCCCAGAAATTTGCCATAGTTCACAAGGTTTTCGGTGCCAGCAACGTTAGCAAAATGTTGCAGGAACTTCCGGTTCACCAGAGAGCAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCCAGAGTCCGAGACCCGGTTTACGGTTGCGTTGGAGCCATATCTTACCTGCAAAACCAGGTCTCAGAGCTTCAAATGCAGCTAGCAGTGGCTCAAGCAGAGATCCTCTGCATTCAGATGCAGCATGAGCCATCAATGCCAAACCCAGGACTAGATGAAATTGACCCAGATCAGAAATCTTACTATCTCCAAAATGACCTCCCTCAGTACTTGAATTTCCCCTCTTCTAGCAATGTAATCCATGATTCTCTCAAGAGAGAGACCATTTTTGGACATGACATggtttctta 503 0.4672 MGGNSPCASCKLLRRRCAKDCIFAPYFPSEDPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPSMPNPGLDEIDPDQKSYYLQNDLPQYLNFPSSSNVIHDSLKRETIFGHDMVS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01388 167 Coils Coil 85 105 - -
Bva12g01388 167 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Bva12g01388 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 160 - -
Bva12g01388 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 160 - -
Bva12g01388 167 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01388 Bva-Chr12 12245883 12246479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01388 3 134 AS2 family AT2G30130 82.707 1.69e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva12g01388 LOB 7.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01388 - - gmx:121173085 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01736 12 14470707 14471528 Bva12g01388 12 12245883 12246479 ECH
Bva12g01388 12 12245883 12246479 Bva12g01388 12 12245883 12246479 ECH