Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01386 ATGGCGAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTTGACAAGCTGGGTGGTGCATTTGCCCCTAAGCCCTCATCTGGACCACACAAATCTAGGGAATGCCTCCCACTGATATTGATCTTGCGAAACCGGTTGAAGTATGCTCTTACATACCGTGAAGTAATTGCTATTCTCATGCAGCGACATGTCCTGGTTGACGGAAAAGTCAGGACAGATAAGACTTATCCTGCTGGTTTCATGGATGTCGTATCTATCCCTAAGACAAATGAGAATTTCCGTCTCCTTTATGACACTAAAGGCAGGTTCCGTCTCCATTCTATCAGAGATGATGAGGCaaagTTTAAGCTCTGCAAGGTCCGGTCAGTGCAGTTTGGGCAGAAAGGTATCCCATACCTGAACACCTATGATGGCCGCACCATCCGCTACCCTGACCCTCTTATCAGGGCTAATGACACCATTAAGCTGGATTTGGATACCAACAAGATCGTTGAGTTCATCAAATTTGATGTTGGGAACGTAGTTATGGTTACTGGTGGAAGGAACAGGGGACGTGTTGGAGTGATCAAGAGCAGGGAGAAGCACAAGGGAAGCTTTGAGACCATCCATGTTCAGGATGCCACTGGGCATGAATTTGCTACTCGTATGGGCAATGTGTTCACCATTGGGAAGGGGACAAAGCCGTGGGTATCCCTCCCCAAGGGTAAGGGTATTAAGCTATCCATCATTGAAGAGGCAAGGAAGAGGATTGCTGCCCAACAAGCAGCCACAGCATA 794 0.4748 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLDTNKIVEFIKFDVGNVVMVTGGRNRGRVGVIKSREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRIAAQQAATA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01386 264 Gene3D - 175 245 IPR014722 -
Bva12g01386 264 CDD KOW_RPS4 175 229 IPR041982 -
Bva12g01386 264 Pfam Ribosomal family S4e 95 169 IPR013845 -
Bva12g01386 264 Gene3D - 122 172 IPR038237 -
Bva12g01386 264 PIRSF RPS4a_RPS4e 1 241 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bva12g01386 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 220 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bva12g01386 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 221 264 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bva12g01386 264 Pfam S4 domain 47 90 IPR002942 GO:0003723
Bva12g01386 264 SMART kow_9 174 201 IPR005824 -
Bva12g01386 264 SMART s4_6 42 106 IPR002942 GO:0003723
Bva12g01386 264 Pfam KOW motif 177 210 IPR005824 -
Bva12g01386 264 Gene3D - 1 117 IPR036986 GO:0003723
Bva12g01386 264 CDD S4 51 112 - -
Bva12g01386 264 Pfam 40S ribosomal protein S4 C-terminus 212 258 IPR032277 -
Bva12g01386 264 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Bva12g01386 264 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Bva12g01386 264 ProSiteProfiles S4 RNA-binding domain profile. 42 104 - -
Bva12g01386 264 Hamap 30S ribosomal protein S4e [rps4e]. 7 238 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bva12g01386 264 PANTHER 40S RIBOSOMAL PROTEIN S4 2 220 - -
Bva12g01386 264 PANTHER 40S RIBOSOMAL PROTEIN S4 221 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01386 Bva-Chr12 12236011 12238499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01386 1 262 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 92.366 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01386 K02987 - gmx:100811336 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01734 12 14459114 14461234 Bva12g01386 12 12236011 12238499 ECH
Bva02g00409 02 5765672 5768227 Bva12g01386 12 12236011 12238499 ECH
Bva01g00103 01 822732 825797 Bva12g01386 12 12236011 12238499 ECH
Bva12g01386 12 12236011 12238499 Bva12g01386 12 12236011 12238499 ECH