Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01373 ATGGAAGAAGCTCTTTCTGCTATGATTTCCTCTGGCTTTTCACCAACTGGGTCTCTGATAGATCCATTGATTGAAATCTCCAATGAAGTTGCCTCCGTTGAAAAGTTCCCTAGTGTACATGCTAGGAATGTTTCATCCATGATAAGAAGGGTCaagcttctttcttctttgtttgatGATATTCAAGAAACAGATGCCCCACTTCCTCCTTCTTCAGTCATTTGTTTCACAGAGCTCTTCTCTGTTATCAGAAGAGTGAAGTTTTTGATCCAAGAGTGCAGGGATTGCAGCTCTCTTTGGGGTCTGATCCAGTTAGAGTTCATTTCCAACAAATTTTATGTGCTGGCGAAGGAGATGGGAAGTGCTCTTGATATCCTTCCTCTGAGCTTGCTTAATATAACAGCAGATGTGAGAGAGCAAGTGGAGCTTCTGCACAAACAGGCAAAAAGGGCTGAGTTGCTTATTGACCCTCGAGAGCTTCAAAGAAGAGAAGTGCTTCTGCAAGTAATGGCCAACAATAATGCAAAAAACAAGAGGAGCAAGGGCAATGTTGACTTTGGGAAAGTGCAAGAAATATTAAGCAACATCGGTTTGAGAAGCCCTTCTGATTATGATGCAGAAGTATCAAGGCTAGAGGCTGAAGCTCAGAAACAAGCAGGCACCGGGGGATTAATCGTTGTCTCCAATATAAACAATCTCATAACTCTGGTTACATATTCCAAATCCATGATATtcagagaggaagaaaatgaagaagacgaagaagaGTGTAAGCCATCATCTGCATTtctatataaacaaaatgatacttcttcatcttctcagTCTGTGATGCCTAATATTCCTGATGAATTTCGTTGCCCCATTTCACTTGATTTAATCAGAGACCCAGTGATTGTATCATCTGGGCATACTTATGATCGTGTTTCCATTGCACAATGGATCAACTCAGGCCATCACACTTGTCCCAAAAGTGGACAAAGGTTAATTCACACAGCTCTAATTCCCAACTATGCATTGAAGAGTCTTGTCCAGCAGTGGTGCCATGAAAATAATGTCACAGTGAATGAGTCCTCAGCATCTGAGGGAAACAATAACAAGAATAATTTGGGTGAGAATGCTGTTGATCATATTTCTGCAAATAAAGCTGCTAAAGACGCTGTCAAAATGACAGCAGAGTTTCTAGTTGGAAAATTGGCAACTGGGTCACCTGATATTCAGAGGCAGGCTGCATATGAACTGAGATTACTTGCAAAAACTGGTATGGATAATAGAAGAATTATAGCTGAGGCTGGGGCAATTCCCTTTTTAGTGACATTACTTGGTTCCAATGATCCAAGAATCCAAGAACACGCCGTCACCGCCTTCTTTAACCTTTCAATCTTTGATAACAATAAGCTTTTGATCATGGCAGCTGGAGCAGTTGACAGCATATTGGAAGTACTTGAGTCAGGAAAAACAATGGAGGCAAGAGAAAACGCAGCAGCAGCAATCTTTAGCCTTTCTATGGTAGATGACTTTAAAGTAACAATTGGAGCTCGTCCAAGGGCCATACCTTCCTTAGTTAGACTCCTGAGAGAAGGCACGCCCGTTGGGCAAAAAGATGCCATAGCTGCTCTTTTCAATCTGGCAGTTTACAATCCAAACAAGGTAGGCATTATTTATGCTGGGACAGTTCCTTTGCTTATGGACTTGCTGATGGATGATAAGGCTGGAATAACAGATGATTCCCTGGCAGTGCTTGCTTTGCTTATGGGTTGCTGTCAAGGGCTGGAACAAATAAGGGATAGCAAAGTGTTGGTGCCTCTTCTTATTGATCTTTTAAGATTTGGGTCAGCTAAAGGAAAGGAGAATTCAATAACTCTATTACTTGGATTGTGCAAAGAAGAAGGTGAGCTTGTCGCGAGGCGCCTTTTGGCCAATCCGCGAAGTATTCCTTCTCTTCAAAGCTTGGCTGCTGATGGTTCTTTGAGAGCTCGTAGAAAGGCCGATGCATTGCTTAGACTGCTAAATAGGTGCTGCTCGCAACCTCATCATTCTCTTTG 2045 0.4059 MEEALSAMISSGFSPTGSLIDPLIEISNEVASVEKFPSVHARNVSSMIRRVKLLSSLFDDIQETDAPLPPSSVICFTELFSVIRRVKFLIQECRDCSSLWGLIQLEFISNKFYVLAKEMGSALDILPLSLLNITADVREQVELLHKQAKRAELLIDPRELQRREVLLQVMANNNAKNKRSKGNVDFGKVQEILSNIGLRSPSDYDAEVSRLEAEAQKQAGTGGLIVVSNINNLITLVTYSKSMIFREEENEEDEEECKPSSAFLYKQNDTSSSSQSVMPNIPDEFRCPISLDLIRDPVIVSSGHTYDRVSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHENNVTVNESSASEGNNNKNNLGENAVDHISANKAAKDAVKMTAEFLVGKLATGSPDIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLGSNDPRIQEHAVTAFFNLSIFDNNKLLIMAAGAVDSILEVLESGKTMEARENAAAAIFSLSMVDDFKVTIGARPRAIPSLVRLLREGTPVGQKDAIAALFNLAVYNPNKVGIIYAGTVPLLMDLLMDDKAGITDDSLAVLALLMGCCQGLEQIRDSKVLVPLLIDLLRFGSAKGKENSITLLLGLCKEEGELVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01373 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Bva12g01373 681 SMART arm_5 587 628 IPR000225 GO:0005515
Bva12g01373 681 SMART arm_5 462 503 IPR000225 GO:0005515
Bva12g01373 681 SMART arm_5 505 545 IPR000225 GO:0005515
Bva12g01373 681 SMART arm_5 546 586 IPR000225 GO:0005515
Bva12g01373 681 SMART arm_5 380 419 IPR000225 GO:0005515
Bva12g01373 681 SMART arm_5 421 461 IPR000225 GO:0005515
Bva12g01373 681 PANTHER U BOX DOMAIN-CONTAINING 17 678 - -
Bva12g01373 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Bva12g01373 681 Pfam U-box domain 281 351 IPR003613 GO:0004842|GO:0016567
Bva12g01373 681 Pfam Armadillo/beta-catenin-like repeat 423 460 IPR000225 GO:0005515
Bva12g01373 681 Gene3D - 364 512 IPR011989 -
Bva12g01373 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 356 IPR013083 -
Bva12g01373 681 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 678 - -
Bva12g01373 681 Gene3D - 513 678 IPR011989 -
Bva12g01373 681 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Bva12g01373 681 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Bva12g01373 681 CDD RING-Ubox_PUB 285 327 IPR045210 -
Bva12g01373 681 SUPERFAMILY ARM repeat 392 670 IPR016024 -
Bva12g01373 681 SUPERFAMILY RING/U-box 269 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01373 Bva-Chr12 12182870 12184915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01373 23 676 U-box Gene Family AT3G46510 37.576 1.68e-126 388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01373 12 12182870 12184915 Bva12g01373 12 12182870 12184915 ECH