Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01368 ATGTCGAGCCAAGACTCTCAGGCATTCAATTGGCACTACAATGAAATCGATGACCGGAACTTGCAAATCAAGGGCCGAACCCTCTTCTTCATCATTGTCCTTTTATCCGTTATCCTTCTTGTCACCCTTCTCTTCCTCTACGCTCGCTGGGTCTGCCGCTACCAGTACCACCTTCCCACCACCTTGGACATTAGCGACGCTCGCCACGCGCCGCCAGCAACACCACAGGGCCTGGACCCTGCTTCCATTAAGAAATTGCCCATAATTTTGCACCAAACGCCGTCGGATTCAAATTGCGCATTGGAGGATACAGAGTGCTGCATATGCCTCGGCGAGTTCAAAGATGGTGACAAATTGAAGGTTTTGCCTGGTTGTGACCATAGTTTTCATTCTGAGTGCGTTGATAAGTGGCTTATAAATCACTCTAGTTGCCCACTCTGCAGAGCTTCTCTGAAGCCCGATTCTTGTGCTTTTCCAAGGATTTTGATTCCAGAACCACCCATCAGAATCAACATCCAGTTCTa 524 0.4866 MSSQDSQAFNWHYNEIDDRNLQIKGRTLFFIIVLLSVILLVTLLFLYARWVCRYQYHLPTTLDISDARHAPPATPQGLDPASIKKLPIILHQTPSDSNCALEDTECCICLGEFKDGDKLKVLPGCDHSFHSECVDKWLINHSSCPLCRASLKPDSCAFPRILIPEPPIRINIQF 174
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01368 174 Pfam Ring finger domain 105 148 IPR001841 -
Bva12g01368 174 SMART ring_2 106 147 IPR001841 -
Bva12g01368 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 154 IPR013083 -
Bva12g01368 174 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 157 IPR044675 -
Bva12g01368 174 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Bva12g01368 174 PANTHER RING-H2 FINGER PROTEIN ATL66 2 157 - -
Bva12g01368 174 SUPERFAMILY RING/U-box 99 154 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva12g01368 Bva-Chr12 12159754 12160278 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01368 2 155 C3H Transcription Factor Family AT3G11110 44.586 3.86e-37 124
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01368 - - gmx:100794927 235.343