Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01367 ATGGATATCATGATCGGTTTGAGCTCTAACAGTGGCGGCGGTGATCGGGTCAAAGGGTCATGGAGTCCCCACGAGGATGCCACTCTGATAAAGCTGGTGGAGCAGCATGGCCCGCGCAATTGGTCCCTTATCAGCAGCGGCATCCCTGGCCGCTCCGGCAAGTCTTGCAGGCTCAGATGGTGTAATCAGCTCAGCCCCAACGTGCAGCATCGACCTTTTACACCCGCGGAGGACGATATCATCGTCCGGTCTCATGCCTTCCACGGCAACAAGTGGGCCACCATCGCACGCCTCTTGCCTGGGCGTACGGATAATGCTATTAAAAACCACTGGAACTCCACGCTTCGTCGCCGGCGAGTGGCGGCGGCGGGCGAGTTGCCATCGCCGTCTGCATCGTCAGAGTCCAACTCGATCTTACCTATGAAGAGGCTGGGGATAGATCCCCTCGTTACCTCTGATCAGTCGGGATTCGGACAGTCATTGAAGCGGCCATGTCTCCGGCCAGTTTCGCAGGAGAATAATATTTCCGATTATCAAAATGAGGAGAAGAGGTTGGAGGGATCTCCAGTGACTTCACTGACATTGTTGCCTCCGGGAGAGAGCGTAACAACGGAGGAAGCGGTGGCAGATGTGAACAAAGTGGAGGAAGAGAATGAGAGAGGGGGGAAGGAGGAGAGTTGCTTGCTGAGGATGATACAACGCATGATAGCAGCGGAGCTTAGGACTTACATTGATAACTTACCCCCTCAAGTTAGGCAAGCACTTAGGACCGGGTCGGGCCTTGACCCAGCTCTTCAAAAGTA 803 0.5492 MDIMIGLSSNSGGGDRVKGSWSPHEDATLIKLVEQHGPRNWSLISSGIPGRSGKSCRLRWCNQLSPNVQHRPFTPAEDDIIVRSHAFHGNKWATIARLLPGRTDNAIKNHWNSTLRRRRVAAAGELPSPSASSESNSILPMKRLGIDPLVTSDQSGFGQSLKRPCLRPVSQENNISDYQNEEKRLEGSPVTSLTLLPPGESVTTEEAVADVNKVEEENERGGKEESCLLRMIQRMIAAELRTYIDNLPPQVRQALRTGSGLDPALQK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01367 267 Gene3D - 71 138 - -
Bva12g01367 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 68 IPR017930 -
Bva12g01367 267 CDD SANT 72 115 IPR001005 -
Bva12g01367 267 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Bva12g01367 267 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Bva12g01367 267 PANTHER MYB PROTEIN-RELATED 12 209 - -
Bva12g01367 267 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Bva12g01367 267 Gene3D - 17 69 - -
Bva12g01367 267 PANTHER TRANSCRIPTION FACTOR MYB73 12 209 - -
Bva12g01367 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Bva12g01367 267 MobiDBLite consensus disorder prediction 168 203 - -
Bva12g01367 267 Pfam Myb-like DNA-binding domain 18 64 IPR001005 -
Bva12g01367 267 Pfam Myb-like DNA-binding domain 72 114 IPR001005 -
Bva12g01367 267 SMART sant 69 117 IPR001005 -
Bva12g01367 267 SMART sant 17 66 IPR001005 -
Bva12g01367 267 CDD SANT 20 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01367 Bva-Chr12 12155726 12156529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01367 15 118 MYB Transcription Factor Family AT2G23290 75.962 1.35e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g01367 Myb_DNA-binding 6.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01367 - - vvi:100260493 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01367 12 12155726 12156529 Bva12g01367 12 12155726 12156529 ECH