Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01366 ATgaaagaaaccaaatcttGGAAGCTAGCATGCTATGCTTGGACAAGTTCACTTAACTGTAAAGTATACGCTGAGATTGCTAAAATGAGGGTCCACGAGGCACACGCAGACAAAGCCCATTTTCAATTTGACCTATTAAAGGTTGCTATATATCACACCAGTCGCCATCAAGATAAGAAGAGATCGCCCATTATTAGTGTAGCAAACAGTAGTTGCagatttgagataaaaagCTCAGAGAGGGTGGGTTCTATCTTGAAAATGGTTTGTATTTTGGATATGGAAAGTTACTACTATTCTGGGTGGCCTCTGAACACTAGTTGGCCTCAATGCAACGCTGCAAAAAGCAGCGAAACTCCCTTTTCAGTCCCAACACCGATTTTGCCTCATGTCTCTGACTCTAAATCTGCTCAGTTCTATGAGTTTCCTCCGTGGTCTTCGCCATTTGAAGGATCTGCGGAAGATAGAGCTGCATCTGCTTCCAAGAGTCATAGCCAAGCAGAGAAACGGCGCAGGGACAGGATCAATGCACAACTTGCAACTCTCAGAAAGCTGATTCCCAAATCTGATAAGATGGATAAGGCAGCCTTACTAGGCAGTGTGATAGATCATGTCAAAGATCTAAAGAGAAAAGCTATGGATATTGACAAAGCCTTAACAGTTCCCAGTGAAATTGATGAAGTAACAATAGACTATGACCCAGCTCAAGATGAAACTTGCACTAAAATAAGCAAATTTAAGGACAAAATCATCATCAAGGCTTCTGTTTGCTGTGATGATAGACCAGAATTGTTCTCTGAACTCATTCAAGTCCTCAAAGGCTCGAGACTTACCGCAGTAAAAGCCGATATAGCCAGTGTTGGCGGCAGAGTTAAAAGCATATTGGTGCTTTGCTCCAAGGATAGCGAAGAGGGTGTTTGCCTAAGCACTCTTAAACAGTCCCTTAAATCAGCCGTGAACAAAGTTGCTACTTCATCCATGGCATCAACTTGTGCCGCTAGAAGTAAAAGGCAGAGGTTCTTCTTGCCTGCCCATTATACGCAGTA 1046 0.4187 MKETKSWKLACYAWTSSLNCKVYAEIAKMRVHEAHADKAHFQFDLLKVAIYHTSRHQDKKRSPIISVANSSCRFEIKSSERVGSILKMVCILDMESYYYSGWPLNTSWPQCNAAKSSETPFSVPTPILPHVSDSKSAQFYEFPPWSSPFEGSAEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDHVKDLKRKAMDIDKALTVPSEIDEVTIDYDPAQDETCTKISKFKDKIIIKASVCCDDRPELFSELIQVLKGSRLTAVKADIASVGGRVKSILVLCSKDSEEGVCLSTLKQSLKSAVNKVATSSMASTCAARSKRQRFFLPAHYTQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01366 348 Gene3D - 153 217 IPR036638 GO:0046983
Bva12g01366 348 SMART finulus 165 214 IPR011598 GO:0046983
Bva12g01366 348 PANTHER TRANSCRIPTION FACTOR BHLH30 124 347 IPR045847 GO:0003700|GO:0006355
Bva12g01366 348 PANTHER TRANSCRIPTION FACTOR BHLH51 124 347 - -
Bva12g01366 348 CDD ACT_UUR-ACR-like 255 291 - -
Bva12g01366 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Bva12g01366 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 211 IPR036638 GO:0046983
Bva12g01366 348 MobiDBLite consensus disorder prediction 151 173 - -
Bva12g01366 348 Pfam Helix-loop-helix DNA-binding domain 162 208 IPR011598 GO:0046983
Bva12g01366 348 CDD bHLH_AtAIG1_like 154 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01366 Bva-Chr12 12152505 12154892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01366 117 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.089 5.54e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva12g01366 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01366 - - gmx:100799687 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01366 12 12152505 12154892 Bva12g01366 12 12152505 12154892 ECH