Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva12g01343 | ATGGGTGTGGATTATTACAAGGTTTTGCAGGTTGACAAGAAAGCTAATGATGAAGACTTGAAGAAGGCTTACAGAAAGCTGGCTATGAAATGGCACCCTGATAAGAACCCAAACAACAAGAAAGAAGCTGAGTccaaattcaaagaaatttctGAAGCCTATGAGGTTCTAAGTGATCCCCAGAAAAGAGCAATTTATGACCAGTATGGAGAAGAAGGGCTCAAGGGCGGGGTGCCACCTCCAGATGCTGGTGGAGCTTCATTCTTCCGAACTGGAGAGGGCCCAACAACGTTTAGATTCAATCCCAGAAACGCGAATGACATTTTTGAAGAATTCTTTGGCTTTTCAAGTCCATTTGGAGGAATGGGAGGTATGAGGGGTGGCTCGAGGTCCTTCAATGGAATTTTTGGGGATGATATATTCTCTTCATTTGGAGAAGATAGGCCAATGAGTCAGGGTCCACGAAAGGCCCCTCCTATTGAGAATACATTGCCTTGCAGCCTTGAAGAACTTTATAAGGGCACTACCAAAAAGATGAAGATCTCAAGGGAAATTGCAGATGCTAGTGGCAAAACTCTGTA | 581 | 0.4303 | MGVDYYKVLQVDKKANDEDLKKAYRKLAMKWHPDKNPNNKKEAESKFKEISEAYEVLSDPQKRAIYDQYGEEGLKGGVPPPDAGGASFFRTGEGPTTFRFNPRNANDIFEEFFGFSSPFGGMGGMRGGSRSFNGIFGDDIFSSFGEDRPMSQGPRKAPPIENTLPCSLEELYKGTTKKMKISREIADASGKTL | 193 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva12g01343 | 193 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 193 | - | - | |
| Bva12g01343 | 193 | MobiDBLite | consensus disorder prediction | 143 | 162 | - | - | |
| Bva12g01343 | 193 | SMART | dnaj_3 | 3 | 62 | IPR001623 | - | |
| Bva12g01343 | 193 | ProSiteProfiles | dnaJ domain profile. | 4 | 70 | IPR001623 | - | |
| Bva12g01343 | 193 | SUPERFAMILY | Chaperone J-domain | 3 | 124 | IPR036869 | - | |
| Bva12g01343 | 193 | CDD | DnaJ | 4 | 59 | IPR001623 | - | |
| Bva12g01343 | 193 | Gene3D | DnaJ domain | 3 | 126 | IPR036869 | - | |
| Bva12g01343 | 193 | PANTHER | DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE | 1 | 193 | - | - | |
| Bva12g01343 | 193 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Bva12g01343 | 193 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Bva12g01343 | 193 | PRINTS | DnaJ domain signature | 62 | 81 | IPR001623 | - | |
| Bva12g01343 | 193 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Bva12g01343 | 193 | Pfam | DnaJ domain | 4 | 67 | IPR001623 | - | |
| Bva12g01343 | 193 | ProSitePatterns | Nt-dnaJ domain signature. | 47 | 66 | IPR018253 | - | |
| Bva12g01343 | 193 | Gene3D | - | 149 | 193 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva12g01343 | Bva-Chr12 | 12024713 | 12027618 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva12g01343 | 5 | 74 | C2H2 Transcription Factor Family | AT1G74250 | 39.189 | 2.71e-11 | 60.1 |