Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01342 ATGGAGACCGAGGCTACTTCAGAAGGGGAGAATCAGCAGAGGGATGCTGCAGAAAATAACAATGAGAACAATGGAAGTAGCAGCAAAATTGGTAATTCCAATGAGGGGCAGAGCAAATCAAAGCGCCAGATGAAAACCCCCTTTCAGCTGGAAACCCTGGAGAAAGCCTATGCATTGGAGACGTACCCGTCGGAGGCGATGCGGGCAGAACTGTCAGAGAAGTTGGGGTTGTCGGATCGGCAATTGCAGATGTGGTTTTGCCATAGGAGGTTGAAGGACAAGAAGGAGTTGCCGCCCAAGAAACCTCGGAAAACGTTGGCGCCTATGCCGGATTCTCCGATTGATGAGCTCAGGTTGGGGGCACCAGAGGTTGGTAACGACTACGGATCCGGGTCGGGTTCGGGCTCAAGCCCGTTCAGTCGTCCGGATTTGAGGAATGTAGTACCTCGGGGTGTGCCTGGGTATTATGAGTCCCCACAGTCTATACTGGAACTTAGAGCAATTGCTTGTGTGGAGGCTCAGTTAGGGGAGCCATTGAGGGAAGATGGACCTGCTCTAGGAATTGAGTTTGATCCATTGCCACCAGATGCATTTGGGCAACCTATAGCAGTTGCCGAGCAGCACAAGCGGCCTAATCTTGCCTATGATGGCAAAATGTATGAGAGACATGATGTTAGATCAAACAAGGCCTTGACAAGAGCTTTTCATGAGTACCCATTTCTTCCGACCCAGTCTGGTATTAGATCAGATGCATATGCACAGTTGACCCAAGCTCATTTACATGATCCAGTAATGGATGGTCATTCATCACGTGTTCGTCTCTTGGCCCAACAAGACAAGCAAGGGGTTCCCTATCCATCACCTCCCCGGGATGATGGCGGTGGCTCCCAAAGGGACTCTTTCACAAACGGAGGCAACACTGGAGGGAACTCTCACTATACGGATCGCCCAAATGTTGGAACAGAGAATCCTTATGCTTTGGCCACTGGACAAGTTTTTCATTGTGACACAATGTTGCGGATGGAGAGGAAACGAAAGAGTGATGATAGTAGAATGGCAAGGGAAGTTGAAGCTCAAGAAATGAGGATTCGAAAAGAACTTGAGAAACAAGATAACCTTAGGCGGAagAGTGAGGAGCGAGTGAGGAAAGAAATGGAGAGACAAGATcgtgaaagaagaaaggaagaggaGAGGTTGATGCgtgagagacagagagaagaggaaagaACGAAGCGCGAGCAAAAACGTGAGCTTGAACGAAgggaaaaatatttgttgaaagaaCATTTAAGAGCTGAGAAAAGGAGGCAAAAGGAAGAGCTtcggaaagagaaagaggcaGAGCGAAGGAAAGCTGCCCTTGAGAAGGCAGTTGCTCGTAGAATAGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCAGCAAGGATAGGGGTTTCCTCCATTATCCATCTTGATCTTCAAACTCTACAAAACCTTGAATCACACAGGGATTCTTTGATTGTTTTCCCACCCAAGAGTATAAAGCTGAAAAAGCCATTTGCTGTCCAACCCTGGATAAACTCAGAGGAGAATGTTGGCAACCTTCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTTGAGTTATGGCCATTCACTCTTGACGAATTTGTGCAAGCATTTCATGACTATGATTCGAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAGGtgataataaaagatattgaacATGTTGCAAGGACGCCTTCGACAGGGTTGGGAATGAACCAGAATGGCGCTGCTAATCCTGCAGGTGGCCATCCAGAGATTGTTGAGGGGGCATATGCTTGGGGCTTTGACATACGAAGTTGGCAGAAGCACTTGAATCAATTGACGTGGCCTGAAATTTATCGACAGTTAGCATTATCTGCAGGATTTGGACCACAgctaaagaaaagaagcatCACGTGGTCATATGTGAATGATAAAGATGAGTGTAGAAGTTGTGAAGATATCATTTCTACACTTCGGAATGGATCAGCAGCTGAAAATGCAGTGGCAAAAATGCAAGAGAGAGGTCTTCTAGCCCCTCGAAGATCTAGGCACAGGTTGACTCCTGGAACTGTCAAATTTGCAGCATTTCATGTTCTATCCCTTGAGGGGAGCAAGGGATTGACAGTGCTAGAACTTGCAGAAAAAATACagAAATCTGGACTGAGGGACCTAACGACAAGCAAGACACCTGAGGCATCGATTTCTGTTGCTTTGACAAGGGATGCTAAGCTTTTCGAAAGAATAGCTCCATCAACATATCGAGTGCGAGCTGCATATAGAAAGGATCCTGCTGATGCTGAGGCCATCCTTTCAGCAgctagaaagaaaattcaggTATTTGAAAATGGGTTTCTGGCTGGTGAAGATGGTGATGGTGACGGCGATGGTGATGGTGATGGTGATGATgttgagagagaagaagattcTGAAAGTGATGAAGTGGATGATGATCCAGAAGTTGATCCGGAAGTTGATGATCTAATTAATCCTTCAACTGCCAACAAGACCTCTGAACAGTATGATGACACAAACATCTGCACAACaaatgggaaagaaaatttggtccaagatgtAGAACTAATTCAAAGTGATTTTGATAAGGACCTGCTTTGTTTTCCTGAGAATGGTTCTAAGGATGCTGATTGTCCTAGTGCTGTTACTGGCCAACCTGTTACTGGTGAAGATTTGAATTCTGTTAACCTTGATGAAGATAATATGGAAATTGATGAAAGCAAATCGGGAGAGTCATGGGTTCAAGGCCTTGCTGAAGGAGAATATTCTGATCTCAGTGTAGAAGAGCGTCTAAATGCTCTTGTCGCATTGGTTGGTGTGGCAAATGAAGGAAACTCAGTCCGTATTGTTCTAGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAGTTAGATAAAATTCGGCTGAAAGACGATAATGCAAATAAGTCAGATTTTATTGGGAATAAAGTTGAAACACAATACTCGTGCCCTCCTGTGGAGGGGAACCAAAGCCCATTGATTGACATTAATATCAGTAATAATGTTGAGGCCTCACCTGGCACTGCAGAAAATCTAAAAGCAGTTCCTGGTTCACAGAGCTTGCCTGCTGAGAAGGCCTCAGTAGTTCAAGATCTCTTCGCAGTTCCAGATAATGCTCAAACTCAGCAACCTGCACATGCTTCAAAAAGGTCCCGTTCACAGTTGAAATCTTATATTGCCCACATGGCAGAAGAGATGTATGTGTACAGGTCCTTGCCCCTGGGACAAGATCGGAGACATAACCGATATTGGCAGTTTGTAGCATCTGCATCTAGTAACGATTCTGGTTCTGGCAGGATCTTTGTGGAATTACATGATGGCAATTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATACTCTTTTGAAGTCACTGGATTCACGAGGGATCAGGGAGTCTCATTTGCGGTTAATGTTGCAAAAGATTGAGAATTCCTTTAAAGAAAATGTTCGGAAGAATGTACAATGTGATAAACTTGGAAGCAAAGGTAAAATTTCTGTTAAAAATGAAGTTGAAGAAACAGATTCCAGTCCTGATCCCCATGTTGGATCTGACAGTCCTAGCAGTACTCTTTGTGGTTTAAATTCTGATACATTGGAAACTTCGTCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGTGAGAAGAAAGCTGCTTTGAGAAGGTATCAAGATTTTCAGAAGTGGATGTGGAAAGAATGCTATAGCGTATCAACATTATGCGCGATGAAATATGGGAGAAAGAGATGTAAAATGCTGGTGGACATATGTGATATCTGTCTCAACTCATATTTCTTTGAAGATTCCCATTGTAATTCTTGCCATTGGACATTTCCCTCAAATAATGGATTTAATTTTGCCAAGCATGCATTTCAATGTGGAGAGAAGAAGTCAGACGCCAAAgacatttgtatttttgatTCTTCTCTTCCCTTGAGAGCAAGATTGCTCAAGGCCCTGTTGGCGTTTATTGAGgtATCTGTTCCACCTGAAGCATTTCAGCCTATTTGGACAGAGGAGAATAGGAAGCGCTGGGGAGTGAAGTTGGGCACATCATCTTCGGTTGAGGAACTTTTACAGAGGTTAACGTTGTTTGAGAAAGCATTACAGCGAGACATTTTGTCATCAAACTTTTCTACAACAGAGGAACTGTTGGGATCGAGCAGTATATCAGATGGTGCTGCACATGCTTCTACTGATCCTGAATCAGTTCCTGTTATTCCATGGGTTCCACAAACCACTTCCGCTGTGTCTCTTAGACTTTTTGACTTTGACACGTCCATCAGCTATGCAAAGCTCGAGAAACCCGAACCTcgtgaagaaaaagaagtcgGAGAATATACAAAACTTCCCGCAAGATTCACTCCCTTCAAGTCTGATAGGGAGGATGAACCAGCAGAATATGCATTGCTTAAAGATAAATCTGCTGACAGGAAAATTGTACGAGGTAGCAGCAATAAACGAGGAAGAGGATCTCAAGATCAAGGACGGGGTAAAAAGTTGTCTAGAAGAATAAGCCAtaccaaacaaaacaattcTGGTAGGCGTAATGCTAAGGTTAATCAAAATCTAAGTCAAGGACTTAAACAGCAGGGGAGAGGAACTCAAGGACAAGCTGGGGCACGTGGTCGAAGAACTGTCAGGAAACGGAGAGTGGAAAAGAGGGCTGTTGAGAATTTATTGTTGGGTCAAACAGCTGCCACTCCAAGCTCCAAGGCGAGTAGAGAATCATTGAGAAGTTTGGAAGAGGAATGGGAAGGTGAAAGAGAAAGTAACATGCACATAGACGGTGCTGATAACAGTAACAGTGCTGAAGAAGTGGAATCTGATGACAACGGCCAAGCAGTGGAGTATGATCAAGGACATTGGGAGGTGGGTTTCAATGGTACATCCAACAGTTGGAGTAGAGGATTAGGTGGTATGAGTGATGAAGACGTCGACGTTTCAGAAGATGACAATGTCATGGAAGAGGTAGAAGATGAGGATTCAGAGGCAGATGTTGTGAGCGAAGGTTCAGATGGCATAGCTAGGAGAGGTGTTGTCAACGAAGGCTCAGACTCTGCTGTTTCTGAAGACTCCTCTGATta 5213 0.4237 METEATSEGENQQRDAAENNNENNGSSSKIGNSNEGQSKSKRQMKTPFQLETLEKAYALETYPSEAMRAELSEKLGLSDRQLQMWFCHRRLKDKKELPPKKPRKTLAPMPDSPIDELRLGAPEVGNDYGSGSGSGSSPFSRPDLRNVVPRGVPGYYESPQSILELRAIACVEAQLGEPLREDGPALGIEFDPLPPDAFGQPIVAEQHKRPNLAYDGKMYERHDVRSNKALTRAFHEYPFLPTQSGIRSDAYAQLTQAHLHDPVMDGHSSRVRLLAQQDKQGVPYPSPPRDDGGGSQRDSFTNGGNTGGNSHYTDRPNVGTENPYALATGQVFHCDTMLRMERKRKSDDSRMAREVEAQEMRIRKELEKQDNLRRKSEERVRKEMERQDRERRKEEERLMRERQREEERTKREQKRELERREKYLLKEHLRAEKRRQKEELRKEKEAERRKAALEKAVARRIAKESMELIEDEQLELMELAAARIGVSSIIHLDLQTLQNLESHRDSLIVFPPKSIKLKKPFAVQPWINSEENVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEHVARTPSTGLGMNQNGAANPAGGHPEIVEGAYAWGFDIRSWQKHLNQLTWPEIYRQLALSAGFGPQLKKRSITWSYVNDKDECRSCEDIISTLRNGSAAENAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRAAYRKDPADAEAILSAARKKIQVFENGFLAGEDGDGDGDGDGDGDDVEREEDSESDEVDDDPEVDPEVDDLINPSTANKTSEQYDDTNICTTNGKENLVQDVELIQSDFDKDLLCFPENGSKDADCPSAVTGQPVTGEDLNSVNLDEDNMEIDESKSGESWVQGLAEGEYSDLSVEERLNALVALVGVANEGNSVRIVLEDRLEAANALKKQMWAEAQLDKIRLKDDNANKSDFIGNKVETQYSCPPVEGNQSPLIDINISNNVEASPGTAENLKAVPGSQSLPAEKASVVQDLFAVPDNAQTQQPAHASKRSRSQLKSYIAHMAEEMYVYRSLPLGQDRRHNRYWQFVASASSNDSGSGRIFVELHDGNWRLIDSEEAFDTLLKSLDSRGIRESHLRLMLQKIENSFKENVRKNVQCDKLGSKGKISVKNEVEETDSSPDPHVGSDSPSSTLCGLNSDTLETSSSFKIELGKSESEKKAALRRYQDFQKWMWKECYSVSTLCAMKYGRKRCKMLVDICDICLNSYFFEDSHCNSCHWTFPSNNGFNFAKHAFQCGEKKSDAKDICIFDSSLPLRARLLKALLAFIEVSVPPEAFQPIWTEENRKRWGVKLGTSSSVEELLQRLTLFEKALQRDILSSNFSTTEELLGSSSISDGAAHASTDPESVPVIPWVPQTTSAVSLRLFDFDTSISYAKLEKPEPREEKEVGEYTKLPARFTPFKSDREDEPAEYALLKDKSADRKIVRGSSNKRGRGSQDQGRGKKLSRRISHTKQNNSGRRNAKVNQNLSQGLKQQGRGTQGQAGARGRRTVRKRRVEKRAVENLLLGQTAATPSSKASRESLRSLEEEWEGERESNMHIDGADNSNSAEEVESDDNGQAVEYDQGHWEVGFNGTSNSWSRGLGGMSDEDVDVSEDDNVMEEVEDEDSEADVVSEGSDGIARRGVVNEGSDSAVSEDSSD 1736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01342 1736 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 9 267 IPR044977 GO:0006357
Bva12g01342 1736 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 272 1736 IPR044977 GO:0006357
Bva12g01342 1736 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 936 979 IPR028942 -
Bva12g01342 1736 ProSiteProfiles DDT domain profile. 530 589 IPR018501 -
Bva12g01342 1736 SMART testlast3 530 589 IPR018501 -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 1 48 - -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 852 871 - -
Bva12g01342 1736 Coils Coil 352 420 - -
Bva12g01342 1736 Pfam DDT domain 531 586 IPR018501 -
Bva12g01342 1736 PANTHER HOMEOBOX DOMAIN PROTEIN 9 267 - -
Bva12g01342 1736 PANTHER HOMEOBOX DOMAIN PROTEIN 272 1736 - -
Bva12g01342 1736 SUPERFAMILY Homeodomain-like 27 95 IPR009057 -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 1685 1709 - -
Bva12g01342 1736 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Bva12g01342 1736 MobiDBLite consensus disorder prediction 93 144 - -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 295 317 - -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 1552 1578 - -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 1617 1636 - -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 10 47 - -
Bva12g01342 1736 Gene3D - 22 97 - -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 1208 1231 - -
Bva12g01342 1736 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1111 1183 IPR028941 -
Bva12g01342 1736 CDD homeodomain 39 96 IPR001356 GO:0003677
Bva12g01342 1736 MobiDBLite consensus disorder prediction 811 847 - -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 366 415 - -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 1509 1736 - -
Bva12g01342 1736 Pfam HB1, ASXL, restriction endonuclease HTH domain 712 780 IPR007759 GO:0006355
Bva12g01342 1736 SMART HOX_1 38 100 IPR001356 GO:0003677
Bva12g01342 1736 Pfam Homeodomain 39 95 IPR001356 GO:0003677
Bva12g01342 1736 MobiDBLite consensus disorder prediction 807 871 - -
Bva12g01342 1736 Coils Coil 426 457 - -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 1509 1525 - -
Bva12g01342 1736 MobiDBLite consensus disorder prediction 278 322 - -
Bva12g01342 1736 ProSiteProfiles HARE-type HTH domain profile. 712 781 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01342 Bva-Chr12 12015123 12024465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01342 32 1673 Homeobox Transcription Factor Family AT1G28420 49.535 0.0 1359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bva12g01342 WSD 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01342 - - gmx:100777465 2218.35