Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01338 ATGGCACTTGTCCtgctcctcctcctcctcctcctttgCTTCGTCTTAACACTACCCACCAACTTCTCTCTGAATCAAGAAGGTCTTTCCCTCTACCAGTTCAAGCTCTCTGTGCAGGACCCACACTCTGTTCTCTCCTCCTGGAGTCTCCACAACCACCCCTGCAACTGGACAGGCATCAAATGCGACCCACAAAAAATCTCCGTTCACTCTCTCAACCTCTCCAACGCCAACATTGCTGGCCTGTTCCCTTCTTCTATTCTCTGTCGCCTCGCCAACCTCACTTCCATTGATCTCTCCCAGAACTCCATTTGTGGCACCCTTTCTTCTGAAATCTCCCTCTGTCAAAATCTCCTTCACCTTGACCTCTCTCAGAACCTCCTCACTGGTCCTCTGCCTCTGAACTTATCTCAAATTCCCAATCTTCGATACCTCAACTTAACCGCCAACAACTTCTCCGGCCAGATACCCCCCACCTTTGGTCACTTTCAAAAGCTTGAGAAGCTCTCTctgaaaaataatcttttaagcGGAAAAATACCCACTTTTCTGGCAAACATTACTACCCTCAATGCTCTTATCCTTTCCATCAACCCGTTCCTTCCTGGTCCGATCCCGCCGGCGTTTGGGAACTTGACGAACCTTGAGACCCTGCAACTTACACAGTGTAACTTGATTGGTAAGCTTCCCAACTCGCTCGGGAAACTCAAGAAGCTCGAGAAATTGATCATGATGCATAACAACCTGAACGGTTCGATTCCGAGTTTTGTTACAAAGTTGACGCGTGTGAGGTGGCTTTGGCTGTCTAATAATTCCTTTTCTGGTAAGTTGCCGCACGGAATGTCTAACATTACTGCATTGAGGGAACTACACGTGTCGAAAAACAATTTGACGGGCACAGTTCCGGATGAGTTGTGTCGATTGCCACTAGAAAGCATTAAACTTCCCGAGAATGATTTTGAAGGAGAATTGCCTCAGTGCATAGCCAACTCACCGAATCTATATGAACTCTCATTGTTCCGGAACAGATTCACCGGAAATCTTCCAAAAAATCTGGGAAAGTTTTCGCCTTTGAGACGTGTAATAATTGGAGTGAATGAGTTCCAGGGTGAAATACCGGCAACCCTGTGTGATCATGGCGAGTTGGAGGAGCTTTCGGCTTCACGCAACTCATTTTCTGGGGAAATTCCGGCGACCCTTGGCACGTGTCAGAGCTTGAGGGTGGTCCGTCTGGGTTTTAATCGGTTATACGGTGATGTTCCGGCGGGTATTTGGGGACATCCACATGTCTCTGTGCTTGAGCTTCAAGAGAATTCTTTTTCTGGTTCGATCTCGAGGACCATCGCCGGGGCTGGAAAACTATCAGAGTTGATTTTATGGAATAACAAGTTCACTGGAACGATCCCAGATGAGATTGGAAGGTTGAGAAATCTTGTGAAATTTAATGGTAGCAATAACAAGCTTAGTGGGTCACTCCCTAATAGTATTTTGAATCTTGGACAACTGGCATGGCTTGATCTTCACAGCAATAATCTCTCTGGTGAGCTTCCAAAGGGAATTCAGTCATTGCAGAAGCTCAGCTCGCTGAATTTAGCTCATAATGAGCTCAGAGGACAAATCCCAGATGAAATTGGGAGCTTGTCTGTGCTCAATTTTCTTGACCTTTCTTACAATCAATTATCAGGGAAAATTCCTACGGGGCTACAGAATTTGAAGCTCCATGAGCTCAATTTGTCATATAATCAACTTTCCGGACAACTTCCCCTTCAGTTGGCTAAGGATATCTACAGCACTAGCTTTCTGGGTAATCCGGGATTATGTGGGGATTTAAGAAGTTTGCGTTATTGCAGAGACAAGACTAGTTCCAAACATATTTGGTTGATCGGAGCTATTTCTgtttttgcaattttgtttGTTCTCACTTCAGTAATGCTCTTCTTGAAGTATAGGAAGAAAAATCCAACCAAATGGACATTGACACCATTTCATAAACTGGGTTTTAATGCATCTGAGATTTTGGAGGGCCTTGATGAAGATAATGTGATAGGAAGTGGATCGTCAGGGAAAGTTTACAAGGTTGAGCTTACCAATGGGGAGACTGTTGCTGTAAAGAGGCTAATTAGGAATGAGGTCAAGAAGGAAATAGAGAGTGGGGAGGTTGAAAATGGTGACGAGGTTCTTCAAGATAGTGCTTTTGATGCAGAAGTTGAAACTTTGAGCAAAATTAGGCACAAGAACATTGTCAGGTTGTGGTGTTGCTGCACCAGCAGTGATTGCAAACTCTTAGTTTATGAGTATATGCCAAATGGTAGTCTTGGTGACTTGCTGCACAGCAGAAATAGTAGAGCAGAAGTGTTGGATTGGCCAAAAAGGTATAAGATAGTTGTTGGTGTAGCAGAAGCATTAGCTTATCTGCATCATGACTGTGTCCCTCCATTCATTCATAGAGATGTGAAATCCAACAATATTTTGCTGGATGTGGACTTTGTTGCTAAGTTGGCTGATTTTGGAGTAGCTAAGATATTTGAAGGAACTAAATCTGTGTCCGTCGTGGCTGGATCTCTTGGCTACATAGCTCCAGAATATGCATATACGCTTAGAGTGAACGAGAAGAGTGATATATACAGTTTTGGCATCGTCATCCTTGAGTTGCTAACTGGAAAGCGCCCTGTAGATCACGAAAACGAGGGAGAAAACTTAGTCAAATGGGCGTGCAAGACATTGGATCAGAAAGGTGAGGACCATGTGCTTGACCCAAACCTTGATTATTCATGTTTCAAACAGGAAATCTGCAAGGTCCTCAACATTGGCCTCCGTTGCACTGATTCTCTCCCAATCAATCGCCCCTCAATGGCAACAGTGGTGAAGATGCtgcaagaaattaaacataaattcatAAGTCCTGAGAGCAACCTTAATTA 2921 0.432 MALVLLLLLLLLCFVLTLPTNFSLNQEGLSLYQFKLSVQDPHSVLSSWSLHNHPCNWTGIKCDPQKISVHSLNLSNANIAGLFPSSILCRLANLTSIDLSQNSICGTLSSEISLCQNLLHLDLSQNLLTGPLPLNLSQIPNLRYLNLTANNFSGQIPPTFGHFQKLEKLSLKNNLLSGKIPTFLANITTLNALILSINPFLPGPIPPAFGNLTNLETLQLTQCNLIGKLPNSLGKLKKLEKLIMMHNNLNGSIPSFVTKLTRVRWLWLSNNSFSGKLPHGMSNITALRELHVSKNNLTGTVPDELCRLPLESIKLPENDFEGELPQCIANSPNLYELSLFRNRFTGNLPKNLGKFSPLRRVIIGVNEFQGEIPATLCDHGELEELSASRNSFSGEIPATLGTCQSLRVVRLGFNRLYGDVPAGIWGHPHVSVLELQENSFSGSISRTIAGAGKLSELILWNNKFTGTIPDEIGRLRNLVKFNGSNNKLSGSLPNSILNLGQLAWLDLHSNNLSGELPKGIQSLQKLSSLNLAHNELRGQIPDEIGSLSVLNFLDLSYNQLSGKIPTGLQNLKLHELNLSYNQLSGQLPLQLAKDIYSTSFLGNPGLCGDLRSLRYCRDKTSSKHIWLIGAISVFAILFVLTSVMLFLKYRKKNPTKWTLTPFHKLGFNASEILEGLDEDNVIGSGSSGKVYKVELTNGETVAVKRLIRNEVKKEIESGEVENGDEVLQDSAFDAEVETLSKIRHKNIVRLWCCCTSSDCKLLVYEYMPNGSLGDLLHSRNSRAEVLDWPKRYKIVVGVAEALAYLHHDCVPPFIHRDVKSNNILLDVDFVAKLADFGVAKIFEGTKSVSVVAGSLGYIAPEYAYTLRVNEKSDIYSFGIVILELLTGKRPVDHENEGENLVKWACKTLDQKGEDHVLDPNLDYSCFKQEICKVLNIGLRCTDSLPINRPSMATVVKMLQEIKHKFISPESNLN 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01338 973 Pfam Protein kinase domain 678 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01338 973 SMART LRR_typ_2 91 115 IPR003591 -
Bva12g01338 973 SMART LRR_typ_2 284 308 IPR003591 -
Bva12g01338 973 SMART LRR_typ_2 212 236 IPR003591 -
Bva12g01338 973 SMART LRR_typ_2 139 162 IPR003591 -
Bva12g01338 973 SMART LRR_typ_2 260 283 IPR003591 -
Bva12g01338 973 SMART LRR_typ_2 499 522 IPR003591 -
Bva12g01338 973 SMART LRR_typ_2 523 547 IPR003591 -
Bva12g01338 973 SUPERFAMILY L domain-like 310 618 - -
Bva12g01338 973 PANTHER LRR RECEPTOR-LIKE KINASE 5 965 - -
Bva12g01338 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Bva12g01338 973 SUPERFAMILY RNI-like 71 416 - -
Bva12g01338 973 SMART serkin_6 676 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01338 973 Gene3D Transferase(Phosphotransferase) domain 1 767 970 - -
Bva12g01338 973 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Bva12g01338 973 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515
Bva12g01338 973 Gene3D Ribonuclease Inhibitor 23 200 IPR032675 -
Bva12g01338 973 Gene3D Ribonuclease Inhibitor 201 311 IPR032675 -
Bva12g01338 973 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Bva12g01338 973 ProSiteProfiles Protein kinase domain profile. 676 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01338 973 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 965 - -
Bva12g01338 973 SUPERFAMILY Protein kinase-like (PK-like) 672 963 IPR011009 -
Bva12g01338 973 Gene3D Phosphorylase Kinase; domain 1 662 766 - -
Bva12g01338 973 ProSitePatterns Protein kinases ATP-binding region signature. 682 704 IPR017441 GO:0005524
Bva12g01338 973 Gene3D Ribonuclease Inhibitor 312 625 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01338 Bva-Chr12 11984449 11987864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01338 19 961 Receptor kinase-like Gene Family AT1G28440 59.499 0.0 1091
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva12g01338 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01338 - - gmx:100819887 1162.9