Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01317 atgGCTTCCTCTAACAGACACTGGCCAAGTATGTTCAAGTCCAAGCCCTGCAACGCCCACCACCAATGGCAACATGACATCAACTCCTCCCTCATCTCCACTGGCTGCCACAGAAGCCCTTACACCTCAGttGGAGGGTGTGAGGATAGGAGTCCAGAGCCAAAGCCAAGGTGGAACCCCAAACCTGAACAAATTAGGATACTTGAAGCTATATTCAACTCAGGAATGGTAAACCCACCAAGGGATGAGATAAGGAAAATAAGGGCACAATTGCAAGAGTATGGTCAAGTGGGTGATGCCAATGTCTTCTATTGGTTCCAGAACCGCAAATCCAGAAGCAAGCACAAGCTTCGCCACCTCCAAAACTCAAAGAATAATAACCAAACCACTCAACAAGCACAAAACCCTTGTTCCTTTCCTTCCACCCCCATCATCACCACCAACACAGCACCTATTTCAtcatcctcttcctcttctgaTAAATCAACTCCCATAGAAATACCCACCAAGGCATTCTCAATTGGGTTTTCTAATGTCAACGAGGTGGTACCAAATTGTCCTACTACCTCTATGAACCAGACCTATTTCCATCCCCACAATGAGAAAACTACTTCTCTATCTCCAGCCGAGCCCTTCTTCTTCCCAATGCAAGTGCAGCATAATGGAGCTGGAGGAGTGGGGAATATGACACAAGGGTTTTGCTTCTCTGAGCTCTCTAATGTTGTTCAACTTCAAAATCAAGCGCATTCAGGACAAGAGAATGTTGAGACATGCACTAACCTCTTGCTTAGTGAGATAATTATGAACAATAACCATGGAGGAGGTGTTGTTGCCTCTTCAAAGAAAGAGCAAGATCGTGAAAAGGTGATGAAGATGATGCAACAACACCCACAGCTCAGTTTCTGTGTTGATTCTGCTGCTGCCTCGACTTCTCTCACTCATAATACTATCGTACCTCCCATTACCTCTACTACTACTGTTACTGTTCCATCCCCCATCCCTCAAGTTCaagGTGTTGGTGAAGCGGGGGCAGTGGGCCCAGCTGCTGGTGCGACCAAATCTACGGTGTTCATAAACGACGTCGCATTCGAAGTTGCGGCGGGACCCTTCAACGTGCGCGAGGCTTTTGGTGACGACGTTGTTCTCATCCATGGTGCTTCTGGTCAGGCCGTTCTCACCAATGAGTGGGGTGTCACTCATTCACTCCAGCACGGTGCATTCTACTATCTGATAta 1235 0.4632 MASSNRHWPSMFKSKPCNAHHQWQHDINSSLISTGCHRSPYTSVGGCEDRSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNNNQTTQQAQNPCSFPSTPIITTNTAPISSSSSSSDKSTPIEIPTKAFSIGFSNVNEVVPNCPTTSMNQTYFHPHNEKTTSLSPAEPFFFPMQVQHNGAGGVGNMTQGFCFSELSNVVQLQNQAHSGQENVETCTNLLLSEIIMNNNHGGGVVASSKKEQDREKVMKMMQQHPQLSFCVDSAAASTSLTHNTIVPPITSTTTVTVPSPIPQVQGVGEAGAVGPAAGATKSTVFINDVAFEVAAGPFNVREAFGDDVVLIHGASGQAVLTNEWGVTHSLQHGAFYYLI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01317 411 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 411 IPR044557 GO:0003700|GO:0050793
Bva12g01317 411 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Bva12g01317 411 MobiDBLite consensus disorder prediction 125 164 - -
Bva12g01317 411 SUPERFAMILY Homeodomain-like 52 119 IPR009057 -
Bva12g01317 411 CDD homeodomain 54 116 IPR001356 GO:0003677
Bva12g01317 411 Gene3D - 55 121 - -
Bva12g01317 411 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Bva12g01317 411 SMART HOX_1 53 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01317 Bva-Chr12 11883098 11885052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01317 1 122 Wox Gene Family AT2G33880 83.065 2.30e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Bva12g01317 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01317 - - gmx:100804839 451.825