Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01313 ATGCATTTCCTTTTCACAAATGACATCTATAGAGCATTTCCAAGATTCTtgttactcttttattttttcttctcctttgtcATCATCAATGGCTGCAGAGGGCGGGTTACTGGCGGAGACAGGGTTATATGCATTGGTTCAATCATTGATGATAACTCTCGTATTGGTAAAGAACAGAAAGTAGCAATggaaatttcagctcaaattTACAATAGCACTTCTAAGACCCACAACTTGTCTCTCTATTTTCAGAACCCCACTAATGAGCCCTTGAGAACTATCTCTCTTGCTGAAGAGATGATTAAAATGCAGAAAGTGCAAGCGATAATAGGCATGCAAACATGGCAGCAAGCACTTCTAGTGGCAGATATTGGAAACCAAGCTCAAGTTCCTATCATATCATTTGCAGCACCTGCTATTACCCCACCATTGACGACGATTCGCTGGCCTTTCCTGGTAAGACTGGCTAAAAATGGCACTGCATACATAAAATGCATTACAGACATAGTGCATCATTATGGTTGGCAAAGAGTGATAGCCATTTATGAAGATGATGCCTATGGTGGAGACTATGGGGTGCTAGCACTCCTTTCTGAGGCCCTCCAAGATGTTAGTTCAACGATTGAGTATCATTTGGCACTTCCCccaatttcttctttgcctGATCCAGAAGGAACAGTTCGTGAAGAACTGCTTAAGTTAATGCAAACTGCACAATCTCGGGTTTTCATAGTTCTTCAATCATCACTAGAAATGACTGTTCAATTGTTCAAGGAAGCTTCACTATTGGGACTTGTGGATAGAGAATCAGCTTGGATTGTCCCAGAGAGCATAAGTAATTTGCTGGACTCTGTCAACAGCTCTGCTACTTCTTACATGGAAGGAGCTTTAGGAATTAAGACTTACTATTCTGAAAATAGCTCTGAGTATCAAGATTTTGAATCTGAGTTCAGGAAAATTTTCAGGGACAAGTACCCTGAGGAAGATAACCGAAACCCAGGACTTTATGCTTTACAAGCATATGATAGCATTAAAATTGTCACACAAGCAATAGAGAGATTAACTAGTCAAAGCAGTAGAAAAAGAACATTATTAGAAGAAATATTGTCTACCAATTTCCTTGGTTTAAGTGGAAAAATACAATTTGAAGGAGGGCAGCTCTTGCAGAATCCTATTCTGAGGATTGTCAATGTTGTAGGGAAGAGTTACAAAGAATTAGACTTTTGGACTCAACAGAAAGGGTTCAACATAACCCTTCCAACAGAACTAGGTGGAGAAAATGCAGATGGTAGGGTCGAAGAATTTGCTGGTATCGTACTTTGGCCTGGGAATTCACAGAAGGTGCCAAAAGGATGGAATATGCCTactaaagaaaagagaatgaaaattgCAGTCCCAGGTAGAACCTCATTTTCCAAGTTTGTCAAGGTTGAACAGAGAGACAATACAACTCAGGTTAGTGGATACTGCATTGAAATCTTTGAGAAGGTGATCAAACTTCTGGAGTATGATCTGCCATATGACTATTATCCGATCAATGGTACCTATCCAGATCTGGTTCAACTTGTATATAACAAGACTTATGATGCTGTGGTTGGAGACATGACCATACTAGCAGAGAGGTTACCATATGTGGACTTCACTGTGCCATATACAGAATCAGGATTGTCAATGATAGTTCCAGCAAAATCTGAAGAGTCAGCATGGATGTTCACGAAGCCCTTCACCTGGCAACTGTGGGCAGTAACTGGTGCCATCTTGCTTTACACAATGTTAATTTTATGGTACCTCGAGCGAGAAGACAATCCAGAGTTTCATGGTGATTGGAGGAGCCAGATTAGCACTGCACTTTGGTTTACCTTTTCATCTCTATTCTTTGCCCATAGGGAGAAAACATACAGCAACTTAACTCGTATGGTGATGGTAGTGTGGCTGTTTGTTGTTTTGATTCTAAACTCAAGTTACACTGCCAGTCTTTCTTCAATGCTCACAGTTCAACAACTGCAGCCAACTATTACAGACATTGAGTGGCTGAAGAGGAACAACATGAAAATTGCTTGTGATAGCGATTCATTTGTCTGGTCATATCTAGAAGAAGTCGAAAAATTCAATAGGGAGAACATCATAAATGTTAGCAGTGAATACAACTATGTTGATGAATTCAGACATAACCACATAGCAGCAGCCTTTCTTGAACTACCATATGAAAAAGTATTCATCAATACGTACTGCAAGGGATATTCTGGCTCCACACCCACCACAAGATTTGGAGGATTAAGCTTTATGTTCCAGAAAGGCTCCCCAGTGACAAAAGATGTTTCTAAAGCTATATTGCGTCTCGCGGAGCAAGGAGAACTGAAAAAACTTGAAGAGAAATGGTTGAATCCTTCACAACAGTGCTCTACTAGCTCAACATCAGATAGTTTGAAGCTAGCAAGCTTTTGGCTGCTCTATATCATATCTGGTGCCACTTCCACCATTTGTTTTCTGCTTTCTGTCTTCAGGTCACTGAAGACTGGCCAACAACGTCAAAATGAGGCACAAGAAGGAAATGAGACCCCAAATGAGGAGAGCTTTTGGAAGAGAGTATCTGACTTAGCAAAGCAGGTTTACAGCAGAAAGCTTAATAATACAAGTGAGGCACAAGTGGTGACTGATTGTTCTTCAAGATGGGATAATATTAGCACTGCCAATAGCCCTGAGCATCGGCAGATCATGGCTTCGTCGGTACAAGAAACCATAGTGCTCTCTTCTCCGCCACCAGGTGTACAAATTGGCAGTCCTGATCAGGGAGTACAAATGGCAATTCTTGACCATAAATA 2822 0.3972 MHFLFTNDIYRAFPRFLLLFYFFFSFVIINGCRGRVTGGDRVICIGSIIDDNSRIGKEQKVAMEISAQIYNSTSKTHNLSLYFQNPTNEPLRTISLAEEMIKMQKVQAIIGMQTWQQALLVADIGNQAQVPIISFAAPAITPPLTTIRWPFLVRLAKNGTAYIKCITDIVHHYGWQRVIAIYEDDAYGGDYGVLALLSEALQDVSSTIEYHLALPPISSLPDPEGTVREELLKLMQTAQSRVFIVLQSSLEMTVQLFKEASLLGLVDRESAWIVPESISNLLDSVNSSATSYMEGALGIKTYYSENSSEYQDFESEFRKIFRDKYPEEDNRNPGLYALQAYDSIKIVTQAIERLTSQSSRKRTLLEEILSTNFLGLSGKIQFEGGQLLQNPILRIVNVVGKSYKELDFWTQQKGFNITLPTELGGENADGRVEEFAGIVLWPGNSQKVPKGWNMPTKEKRMKIAVPGRTSFSKFVKVEQRDNTTQVSGYCIEIFEKVIKLLEYDLPYDYYPINGTYPDLVQLVYNKTYDAVVGDMTILAERLPYVDFTVPYTESGLSMIVPAKSEESAWMFTKPFTWQLWAVTGAILLYTMLILWYLEREDNPEFHGDWRSQISTALWFTFSSLFFAHREKTYSNLTRMVMVVWLFVVLILNSSYTASLSSMLTVQQLQPTITDIEWLKRNNMKIACDSDSFVWSYLEEVEKFNRENIINVSSEYNYVDEFRHNHIAAAFLELPYEKVFINTYCKGYSGSTPTTRFGGLSFMFQKGSPVTKDVSKAILRLAEQGELKKLEEKWLNPSQQCSTSSTSDSLKLASFWLLYIISGATSTICFLLSVFRSLKTGQQRQNEAQEGNETPNEESFWKRVSDLAKQVYSRKLNNTSEAQVVTDCSSRWDNISTANSPEHRQIMASSVQETIVLSSPPPGVQIGSPDQGVQMAILDHK 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01313 940 SMART GluR_14 462 796 IPR001320 GO:0015276|GO:0016020
Bva12g01313 940 Pfam Ligand-gated ion channel 796 822 IPR001320 GO:0015276|GO:0016020
Bva12g01313 940 Gene3D - 41 162 - -
Bva12g01313 940 CDD GluR_Plant 459 794 - -
Bva12g01313 940 PIRSF IGluLR_plant 11 919 IPR017103 -
Bva12g01313 940 Gene3D - 163 332 - -
Bva12g01313 940 Gene3D - 343 463 - -
Bva12g01313 940 CDD PBP1_GABAb_receptor_plant 44 415 IPR044440 -
Bva12g01313 940 Pfam Receptor family ligand binding region 71 398 IPR001828 -
Bva12g01313 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 912 - -
Bva12g01313 940 Pfam Bacterial extracellular solute-binding proteins, family 3 480 795 IPR001638 -
Bva12g01313 940 Gene3D - 464 567 - -
Bva12g01313 940 SUPERFAMILY Periplasmic binding protein-like II 436 795 - -
Bva12g01313 940 Gene3D - 568 710 - -
Bva12g01313 940 Gene3D - 745 802 - -
Bva12g01313 940 PANTHER GLUTAMATE RECEPTOR 3.4 34 912 - -
Bva12g01313 940 SUPERFAMILY Periplasmic binding protein-like I 40 452 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01313 Bva-Chr12 11862208 11865740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01313 16 833 Ion Channels AT2G29120 33.568 4.82e-147 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01313 - - gmx:100818619 1216.83