Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01311 ATGGGGTTTGAAGATGAAGCTCGTGGTTCACTTACCATAAGCCTCAAGGTCATGCTGGGCTCTGCTTTCGCATTATTTGCTATTGTTTtgttcatcatcatcttcttccgTCTCTATGCAAGATCTCGCCTGAGACACCAACAGAGAAGACGCCGGGAACTTGTCTTTCAGATCAGCAATCAAATTGCACCTGTTGGCGTGAGTTCCTCGGAGTCACCTAAGTCAGGCCTTGACCCTGTGATCATAGCTTCACTGCCTAAACTCTTGTACAAGAACTCGGAGCAGTTCAGCCATGGCGAATTCCCAGAGTGTTCGGTTTGCTTAGGGACCATTGTGGAAGATGCAACCGTAAGGGTGTTACCAAATTGTAAGCACATGTTTCATGTTGATTGTATTGATACGTGGTTTGGTTCGAATACTACTTGCCCGATTTGCCGCACCGTGGCTGAGCCCGTTGTGCAGAAGGGTCCACAGGTTCAACCCACAGCACCACCGGTGGAGGAAGGTGTGCCGATTGATGCTAATGAATTGGAGAAGGTTGGTGGTTCAGGCACTCCGGGGTTGAGAGCAGCCTCTTTTCAAGTGATGCTTAGTAGGGGAAGACCAGTCGGAGAATCTGAGAGCGTAGAAAGACACTA 638 0.4749 MGFEDEARGSLTISLKVMLGSAFALFAIVLFIIIFFRLYARSRLRHQQRRRRELVFQISNQIAPVGVSSSESPKSGLDPVIIASLPKLLYKNSEQFSHGEFPECSVCLGTIVEDATVRVLPNCKHMFHVDCIDTWFGSNTTCPICRTVAEPVVQKGPQVQPTAPPVEEGVPIDANELEKVGGSGTPGLRAASFQVMLSRGRPVGESESVERH 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01311 212 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Bva12g01311 212 SUPERFAMILY RING/U-box 89 152 - -
Bva12g01311 212 SMART ring_2 104 145 IPR001841 -
Bva12g01311 212 Pfam Ring finger domain 103 146 IPR001841 -
Bva12g01311 212 PANTHER RING FINGER DOMAIN-CONTAINING 1 202 - -
Bva12g01311 212 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 1 202 - -
Bva12g01311 212 CDD mRING-H2-C3H2C2D_ZSWM2 103 146 - -
Bva12g01311 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01311 Bva-Chr12 11855484 11856276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01311 9 201 C3H Transcription Factor Family AT2G42360 34.804 8.16e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01311 K19038 - gmx:100779105 208.379