LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g01298	ATGGAATTCCCCAAGAAGCGGAAAACCGAAGAGAATGGGAACACTGATTCTCCGCCGCCCTCCACCGCCATCACCACCCTTTCGCCTGAAGACATCCGCAGGATCCTCCAGCCCTTCACCCAGGACCAACTCCTTGAACTTCTTCAGTCAGCGGCCCTTCGTCACCCAGATGTTTTAGAGTCTATCCGTTCTGTTGCCGACCGCGATTCCACTCTCCGGAAACTCTTTGTCCGTGGCCTCGCCGGAGAAACCACCACGGACACGCTTCGCAGTATCTTTTCCTCCTTCGGGGAACTCGATGAGGCCATTGTCATCTTTGATAAATCGACTGGAAAGTCCAAAGGTTACGGGTTTGTAACATTTAAGCACGTTGATGGTGCTGTACTGGCGCTGAAGGAACCCAGCAAGAAAATTGACGGGAGGATGACGGTGACCCAGTATGCTGCTGCTGGGATGTCGGGTGGCTCCGGCACCAATGGGGCGGCAGCGGCGAGCGATGTTTCGGCAAGAAAAATTTTTGTGGGGAATGTGCCATTTGATATCTCATCAGAGAAGCTGTTGAGTCACTTTCTGATGTATGGGGAAATTGAAGAAGGGCCCCTTGGGTTCGATAAAGGGAGTGGAAAGTCAAAAGGGTTTGCTTTCTTTGTCTATAAGACAGAGGAGGGTGCAAGGGCGTCACTTGTCGAGCCTACCAAGACAATTGATGGGCATCCAGTGGTTTGCAAGTTGGCTGTGGACAATAAGAAGGGAAAGCCAGGGGGACTTCAGAATCAAACGCCTTCGGGGTTTACAGGAGACGGCATGGCAGCACAGCAACAACAACCTTTGCCTGGTTCTATGATGCCATTGCAATACCATTATCCTGCCCCTGGCACATTGCCTGGTAATAATTATGCCTTGCAGGGTGGGGTCGGGTATACTTCTCAGATTCCGTCTTCCTACGGCCCTGGAGGTGCATACACCGGTTCACAGTTTGGTGGGCCAACCTCTGGTGATTATGGTGGGAGGTTGCCTCCAAGTTCTGCTGGATTTTCTGATGGTTCGCATTATGGTTTGACCTCCTCTGCACTTCCCTCGCAGCAgcatcaacagcccaggccaATGCCTAGACTTGCGCCTGGAGGGATGTACCAAGGCATGCCGCCCTACTACTG	1157	0.5151	MEFPKKRKTEENGNTDSPPPSTAITTLSPEDIRRILQPFTQDQLLELLQSAALRHPDVLESIRSVADRDSTLRKLFVRGLAGETTTDTLRSIFSSFGELDEAIVIFDKSTGKSKGYGFVTFKHVDGAVLALKEPSKKIDGRMTVTQYAAAGMSGGSGTNGAAAASDVSARKIFVGNVPFDISSEKLLSHFLMYGEIEEGPLGFDKGSGKSKGFAFFVYKTEEGARASLVEPTKTIDGHPVVCKLAVDNKKGKPGGLQNQTPSGFTGDGMAAQQQQPLPGSMMPLQYHYPAPGTLPGNNYALQGGVGYTSQIPSSYGPGGAYTGSQFGGPTSGDYGGRLPPSSAGFSDGSHYGLTSSALPSQQHQQPRPMPRLAPGGMYQGMPPYY	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g01298	385	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	75	141	IPR000504	GO:0003723
	Bva12g01298	385	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	172	239	IPR000504	GO:0003723
	Bva12g01298	385	Gene3D	-	37	159	IPR012677	-
	Bva12g01298	385	CDD	RRM_RBM24_RBM38_like	73	148	-	-
	Bva12g01298	385	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	170	261	IPR000504	GO:0003723
	Bva12g01298	385	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	73	150	IPR000504	GO:0003723
	Bva12g01298	385	CDD	RRM_RBM24_RBM38_like	170	245	-	-
	Bva12g01298	385	SUPERFAMILY	RNA-binding domain, RBD	165	256	IPR035979	GO:0003676
	Bva12g01298	385	SUPERFAMILY	RNA-binding domain, RBD	64	152	IPR035979	GO:0003676
	Bva12g01298	385	MobiDBLite	consensus disorder prediction	1	24	-	-
	Bva12g01298	385	MobiDBLite	consensus disorder prediction	318	385	-	-
	Bva12g01298	385	MobiDBLite	consensus disorder prediction	250	270	-	-
	Bva12g01298	385	MobiDBLite	consensus disorder prediction	253	270	-	-
	Bva12g01298	385	PANTHER	GEO13361P1-RELATED	1	353	-	-
	Bva12g01298	385	Gene3D	-	160	276	IPR012677	-
	Bva12g01298	385	MobiDBLite	consensus disorder prediction	347	367	-	-
	Bva12g01298	385	SMART	rrm1_1	74	146	IPR000504	GO:0003723
	Bva12g01298	385	SMART	rrm1_1	171	243	IPR000504	GO:0003723
	Bva12g01298	385	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	1	353	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g01298	Bva-Chr12	11795143	11798651	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g01298	162	340	C2H2 Transcription Factor Family	AT2G19380	31.980	8.06e-18	83.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g01298	K12741		-	zju:107411269	474.552