Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01275 atggaagatcAGGCAGTTTTAGGTGGTGGAGTTTTTGTTAGTTTTGTCagggaagaagaggaagatgagTTTCGCAGTTGCTGTGGAGATGAAGATGTATGGAAAGAAACTGAGGAGCGGGTGAAAGAAGAGTTGAAGGATGACCTCGATGAATTCTCAGTAAAAATGTTCTTCAAGGGGTTGTCAATTGTAGGAGTTGAAAATTCCAATTCAGGGTTTTCTGGAATTGGGGTTGTCATGGAAAGACCATCTGGTATACCTGCAATTCGGGTGCAGAAAAAGCTTGATCTTTATGTAGAGGAGTCAGTAGCTAACTACTTGGCTCTCATGGATGGTTTGGTGGAAGCTGTGCAAAATAAGATCCGCAGGGTTTATGCTTTTACAGATTCTGAGTTTTTATACAATCAGATAATGTTAGAGAAAAATCTTGATATGCCACTTTTAATGGCACTGAGAGAAAGGATTCTGGAACATGCCAATATGTTCGATGCTTTTGTTCTGAATCTTGTTCCCAGTATTGATCTTGAGCAGCCACTGCAATTAGCAAAAGTAGCTATTGGACTTGTCTCTTTTCCTATAACTGGTGAGAGATTACTTAGAAGCTGTTCTATTTGTTGTGAGGACAAGCCATTGCCAATTGTGATCACTATGAAATGTTCACACAAGTTTTGTTCACATTGCTTGAGGGCCTATGCTGATGGAAAAGTACAGTCTTGTCAAGTCCCCATAAGATGCCCTCAACCAGGATGCAAATATTACATCTCTATCACAGAGTGCAGgtcttttcttccatttacCTCTTTTGAATCTTTGGAGAAAGCCCTTGCTGAAGTGAATGTTTGCCACTCACATAGAATATACTGCCCATTTCCTAATTGTTCAGTTCTCCTTGATCCTCGTAAATGTTTATCAGCTAGGGCTAGCTCTTCTAGCCAATCAGACAATTCTTGTGTTGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTGAGGTTCCTTGGCATTCTTCTATGACGTGCGAAGAGTACCAGAATCTGCCAGAGGAGGAGAGAGATGCTTCTGACATAACCTTGCATCGACTTGCTCAAAATAAAAGGTGGAGTCGTTGTCAGCAGTGTCGCCGAATGATTGAGCTCACCCAAGGTTGTTACCACATGACGTGCTGGTGTGGTCATGAGTTCTGCTATTCCTGTGGTGCGGAGTACAGGGATTCCGAGCAGACATGTCAATGTGCATTCTGGGATGAAGACAACTCTGTAGACTCGATGACTCAATCGCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCCCAATGATCACAGATGCTTATACTGACCAAGAAAGATCGCAGCTTCAACTTATACAGAGATTCCTAGCTGGGGGTTTCAGCCTGGCTGACCATCATCCTTACCAATCTCCGCCCCGCTGTACAGATTCTTATGTAGACGCCATGAAGGATCTCCATCAGCTTCCATGGCTTGAGAGGTTTGTGTCTGTGATAAGCGACAACTACTACGAAGACTATATTCAGTG 1550 0.4168 MEDQAVLGGGVFVSFVREEEEDEFRSCCGDEDVWKETEERVKEELKDDLDEFSVKMFFKGLSIVGVENSNSGFSGIGVVMERPSGIPAIRVQKKLDLYVEESVANYLALMDGLVEAVQNKIRRVYAFTDSEFLYNQIMLEKNLDMPLLMALRERILEHANMFDAFVLNLVPSIDLEQPLQLAKVAIGLVSFPITGERLLRSCSICCEDKPLPIVITMKCSHKFCSHCLRAYADGKVQSCQVPIRCPQPGCKYYISITECRSFLPFTSFESLEKALAEVNVCHSHRIYCPFPNCSVLLDPRKCLSARASSSSQSDNSCVECPVCQRFICVDCEVPWHSSMTCEEYQNLPEEERDASDITLHRLAQNKRWSRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDSEQTCQCAFWDEDNSVDSMTQSLQESEQWAWETFNSLPMITDAYTDQERSQLQLIQRFLAGGFSLADHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDNYYEDYIQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01275 516 ProSiteProfiles Zinc finger RING-type profile. 202 246 IPR001841 -
Bva12g01275 516 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 19 515 IPR031127 GO:0004842|GO:0016567
Bva12g01275 516 SMART ibrneu5 351 410 IPR002867 -
Bva12g01275 516 SMART ibrneu5 269 341 IPR002867 -
Bva12g01275 516 Pfam IBR domain, a half RING-finger domain 278 341 IPR002867 -
Bva12g01275 516 Pfam IBR domain, a half RING-finger domain 361 410 IPR002867 -
Bva12g01275 516 Pfam Reverse transcriptase-like 68 171 IPR002156 GO:0003676|GO:0004523
Bva12g01275 516 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 19 515 - -
Bva12g01275 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 284 IPR013083 -
Bva12g01275 516 Gene3D - 339 493 - -
Bva12g01275 516 SUPERFAMILY RING/U-box 354 418 - -
Bva12g01275 516 SUPERFAMILY RING/U-box 201 278 - -
Bva12g01275 516 Coils Coil 35 55 - -
Bva12g01275 516 ProSiteProfiles TRIAD supradomain profile. 198 416 IPR044066 -
Bva12g01275 516 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Bva12g01275 516 Gene3D - 54 189 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01275 Bva-Chr12 11685312 11689293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01275 88 401 C3H Transcription Factor Family AT2G19610 26.562 4.89e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01275 - - gmx:100783040 871.307