Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01271 ATGGAATGGGGTGGAGGTGGCGGTTTTTGGAGTAGTGGTAGAGGAGCTGGGAGAGGTAAGCGTGGTAGAGAACGGGAAGCTGGATACAGTGTTTACGGCGGAAAAGGGTCGGATCAGCCGACATGGCATCATCAAGGCACTGATGGCGTTGGTCATAGCGGAAGAGTAGTTCAGCATTCGCAAGAGCAGCCTCAACCACCACCATTAGCACGGGGTCGTGGTGTTCCTAATCAACGGTCTTGGGCTCTTTCCGATGAGGGTTCCAGCAGGGGCAGCTATCctagaggaggaggaggaggagcaGGAGGTGGTAATGCAGTTTGGCAGAGTCCGCCTATCAGTAATACCTTTCCAGTTCCGTCCAGTGGGAGTTCTGAGCCCGCCTTAGTTGAAAAGCTCAAGGAGCTGAATATATCCCCAgaaaatatgaacaaaataaaaatgcctGTTAAAAGACCTGATAGAGGTGGCACAATAGCAATTCGAACTAGCAACCTCCGTGTCAATTACTTTCCTGTGGGGTTCAACGTTCAGACTGTAATAATGCATTACCATGTTGATGTGACACCGGAGTTGCCTCCAAAACATGGTCggtcaaagaaaatttctaaGTCTGATCTGTCTATGATCAGAGAGAAATTGTTTTCTGATGAACCTCAAAGATTGCCATTGAAAATGACAGCATATGATGGACAGAAGAACATATTTAGTGCAGTTCCATTGCCAGAAGAAACATTTAAAGTGGTTATTTCTAGAGAAGACTCAGAAGAGGATGAGAAAAATGTTTCGTATATGGTTACTCTAACATTTGTCAATAAACTTGAGCTTCGTAAGTTGAAGGACTATCTTAGTGGTCGTGTTCTGTCAATTCCCCGGGATATATTACAAGGGTTGGATTTGGTAATGAAGGAGAATCCATCTAGGTGCACAGTTTCTGTGGGACGAAATTTTTATTCCACAAGGGAAGCACAGGATATTCAGCCAGGTGTATTGGCAATAAGAGGCTTTCAACCTAGCCTCAAGCCTACATCTCAGGGTTTGTCTTTATGCCTGGACTATTCTGTTTTGGCATTCCGAAAGCAAATGTCAGTTTTGGATTTCCTTCATGAGCATAATGAAAGATTTAACTTGAAAGAATTTGGGAGGTTTAGGAGATATGTCGAAGAGACACTAGTTGGCCTGAAAGTTAATGTGACTCACCGcagaaccaaacaaaaatacacCATCGCAAGGTTAACATCAAAGAATACAAGGTACATCACTTTCTCTGTCGAAGGCCTAGAGGGCCAGAATCCACCAAGAAATATCAGTCTTCTTGattttttccaagaaaaatatggGGTGGACATTCAACACAAAGATATTCCTTGCTTAGATTTGGGAAAAGGGAAGAAGATAAACTATGTGCCTATGGAGTTCTGTGTCTTGGTTGAGGGTCAAAGATATCCAAAAGAGCATTTAAGTTATAGTGGTGggaaaatgttgaaaaaaatttcactggCCAATCCAAATGAGAGAGAGAACATAATACAGAGGATGGTGCAGTCAGAAGATGGACCTTGCGGTGGTGGTATCATCcaaaattttggaatgaaTATTAGCATGAACATGACAAAGGTTGAAGGACGTGTGATTGGGCCTCCAGAATTGAAGTTGGGTAAACCAAATGGTGAGATAATGAAGATACATTTGAACCCAGAAAAATGTAACTGGGATCTACTTGAAAGGTCAATGGTGGAAGGCAAACCAGTTGATTGTTGGGGCATCCTTGACTTTACTAGAAATGAACGTGATAGTTTAGACGTCAATAAATTCATAAGGAATCTTACTGCTAGGTACAAAAAGTTGGGTATTGGCATGAACAGTCCTGTTGTTTGTGAATCTTTTCCAATGAGAGCACTTTCATATGTAAATTTGCTCTATGAATTACTGGAGGGAATTACCGAGAAGGCTCATAAATGTGGCAATGGTAGACTACAATTTCTTCTGTGTGTGATGACCAGGAAAGATCCAGGTTACAAGTACCTAAAGTGGATTTCTGAGACCAAAGTTGGTATTGTTACACAATGCAGCTTGTCTCGAAACGCTAATGAAGGGAGAGACCGATATCTTACTAATCTTTCCCTCAAGATCAATGCCAAACTTGGAGGAAGTAATGTGGAACTGGGTAATGGGCTCCCTTACTTTAAGGGCGAAGGACCTGTTATGTTTGTGGGGGCTGATGTCAATCATCCTGCTTCTAGGGATACTAAGAGTCCTTCAATTGCTGCTGTGGTTGCAACTGTTAACTGGCCTGCTGCAAATCGCTATGCAGCACGTGTTTGCCCTCAGTATCATCGTAGTGAGAAGATTTCTAACTTTGGGAAAATTTGTCTTGAGCTTGTTCAGTGCTATATCCAGTTAAACAATGCTAGGCcagcaaaaattattatttttcgtGATGGAGTGAGTATGGGCCAGTTTGATATGGTGTTGAATGAAGAGCTGTCGGATTTGAAGATAGCATTTCAGAGCATAGATTTCTTTCCAACTGTTACACTTATTGTGGCACAAAAGCGACATCAAACTCGATTATTTCCCGAGGGTAGATGGAGGGAAGGTGGTCCTAATGGCAATGTATTTCCAGGAACAGTTGTGGACACAAAAATCACACACCCTTTTGAGTTTGACTTCTACCTTTGTAGCCACCATGGAAGCCTAGGAACGAGCAAGGCCACGCACTATCATGTCTTGTGGGATGAGCACAAGTTTACGTCTGATGCATTGCAGAAACTCATTTATGATATGTGCTTCACCTTTGCCAAGTGCACCAAACCTGTATCTTTGGCACCTCCAGTGTATTATGCTGACCTTGCTGCTTACAGAGGACGTTTATACCATGAAGTATTGACTGAGATGCAATCTCCAAACTCGGCAGCATCTTTGTCATCATCACCTGCAGCTTCTTCATCAATTTCCTCAACCACTTCTGTTGATCAGAAGCCTTATAGGTTGCATGCTGACATAGAGAACAGAATGTTCTTCATCTG 3029 0.4067 MEWGGGGGFWSSGRGAGRGKRGREREAGYSVYGGKGSDQPTWHHQGTDGVGHSGRVVQHSQEQPQPPPLARGRGVPNQRSWALSDEGSSRGSYPRGGGGGAGGGNAVWQSPPISNTFPVPSSGSSEPALVEKLKELNISPENMNKIKMPVKRPDRGGTIAIRTSNLRVNYFPVGFNVQTVIMHYHVDVTPELPPKHGRSKKISKSDLSMIREKLFSDEPQRLPLKMTAYDGQKNIFSAVPLPEETFKVVISREDSEEDEKNVSYMVTLTFVNKLELRKLKDYLSGRVLSIPRDILQGLDLVMKENPSRCTVSVGRNFYSTREAQDIQPGVLAIRGFQPSLKPTSQGLSLCLDYSVLAFRKQMSVLDFLHEHNERFNLKEFGRFRRYVEETLVGLKVNVTHRRTKQKYTIARLTSKNTRYITFSVEGLEGQNPPRNISLLDFFQEKYGVDIQHKDIPCLDLGKGKKINYVPMEFCVLVEGQRYPKEHLSYSGGKMLKKISLANPNERENIIQRMVQSEDGPCGGGIIQNFGMNISMNMTKVEGRVIGPPELKLGKPNGEIMKIHLNPEKCNWDLLERSMVEGKPVDCWGILDFTRNERDSLDVNKFIRNLTARYKKLGIGMNSPVVCESFPMRALSYVNLLYELLEGITEKAHKCGNGRLQFLLCVMTRKDPGYKYLKWISETKVGIVTQCSLSRNANEGRDRYLTNLSLKINAKLGGSNVELGNGLPYFKGEGPVMFVGADVNHPASRDTKSPSIAAVVATVNWPAANRYAARVCPQYHRSEKISNFGKICLELVQCYIQLNNARPAKIIIFRDGVSMGQFDMVLNEELSDLKIAFQSIDFFPTVTLIVAQKRHQTRLFPEGRWREGGPNGNVFPGTVVDTKITHPFEFDFYLCSHHGSLGTSKATHYHVLWDEHKFTSDALQKLIYDMCFTFAKCTKPVSLAPPVYYADLAAYRGRLYHEVLTEMQSPNSAASLSSSPAASSSISSTTSVDQKPYRLHADIENRMFFI 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01271 1009 Pfam Piwi domain 662 957 IPR003165 GO:0003676
Bva12g01271 1009 MobiDBLite consensus disorder prediction 1 126 - -
Bva12g01271 1009 Pfam PAZ domain 368 487 IPR003100 GO:0005515
Bva12g01271 1009 ProSiteProfiles Piwi domain profile. 661 961 IPR003165 GO:0003676
Bva12g01271 1009 SMART Piwi_a_2 661 960 IPR003165 GO:0003676
Bva12g01271 1009 Pfam N-terminal domain of argonaute 164 302 IPR032474 -
Bva12g01271 1009 Pfam Argonaute linker 1 domain 312 360 IPR014811 -
Bva12g01271 1009 Gene3D - 730 1009 IPR036397 GO:0003676
Bva12g01271 1009 Gene3D - 544 723 - -
Bva12g01271 1009 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 98 1008 - -
Bva12g01271 1009 SUPERFAMILY Ribonuclease H-like 647 961 IPR012337 -
Bva12g01271 1009 SMART PAZ_2_a_3 362 496 IPR003100 GO:0005515
Bva12g01271 1009 MobiDBLite consensus disorder prediction 108 123 - -
Bva12g01271 1009 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 98 1008 - -
Bva12g01271 1009 SUPERFAMILY PAZ domain 357 515 IPR036085 GO:0005515
Bva12g01271 1009 CDD Piwi_ago-like 525 959 IPR045246 -
Bva12g01271 1009 SMART DUF1785_2 311 361 IPR014811 -
Bva12g01271 1009 CDD PAZ_argonaute_like 362 477 - -
Bva12g01271 1009 Gene3D paz domain 356 482 - -
Bva12g01271 1009 ProSiteProfiles PAZ domain profile. 362 478 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01271 Bva-Chr12 11673804 11678314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01271 181 976 Eukaryotic Initiation Factors Gene Family AT1G48410 35.981 1.45e-149 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01271 K11593 - gmx:100783571 1122.07