Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01269 ATGGCGGTTTCAGTTCCGGCGATCCAGAACAAGATCCGATGGGGGGAGCTGGAGGAAGACGATGGAGAGGATCTGGACTTTTTGCTACCGCCTCGACAGGTGATTGGTCCAGATGAGAACGGTATAAAGAAGGTGATTGAATACAAATTCGACGATAATGGAAATAAGGTGAAAATTACTACTACCACTCGCACTCGTAAGCTTGCTAATGCTCGCCTCAGTAAGCGTGCCGTTGAGAGGCGATCATGGGCTAAGTTTGGCGATGCTGTTCACGAGGACGTTGGTAGCAGGCTCACCATGGTTTCCACTGAGGAAATCCTCCTCGAGCGACCTAGAGCTCCAGGTAGCAAGGCGGACGAACCAAAGGCTGCTGGAGACCCATTGGCTCAATTCCAGAAAGGTGGAGGTGCTGTCCTCATGGTTTGTAGGACTTGTGGGAAGAAGGGTGATCACTGGACATCAAGGTGTCCTTACAAGGATCTTGCCTCAACAGCTGAGGGATTTATTGATAAGCCTGCTGTATCAGAAGCTGCAACCACTGCTTCTGGTCCTAAAACATATGTTCCTCCTGGTCTGAGAGGAGGAGGTTCAGATAGGTCTGCACCTGATATGCGAAGAAGGAATGATGAAAATTCTGTCCGGGTAACCAACCTCTCTGAGGATACAAGAGAGCCTGATTTGCTTGAGCTGTTCCGTCCTTTTGGCGCTGTAAGCAGAGTCTATGTAGCCGTTGATCAAAAGACTGGCGTGAGCAGAGGATTTGGTTTTGTTAACTTTGTGAACAGGGAAGATGCGCAGAGAGCCATTAACAAGCTCAATGGATATGGTTACGACAATCTCATCCTTAGAGTTGAATGGGCGACTCCAAGAACAAACTA 878 0.4875 MRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGVSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRTN 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01269 89 Gene3D - 1 89 IPR012677 -
Bva12g01269 89 SUPERFAMILY RNA-binding domain, RBD 6 88 IPR035979 GO:0003676
Bva12g01269 89 SMART rrm1_1 9 82 IPR000504 GO:0003723
Bva12g01269 89 CDD RRM_eIF3G_like 9 84 IPR034240 -
Bva12g01269 89 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 89 - -
Bva12g01269 89 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Bva12g01269 89 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 76 IPR000504 GO:0003723
Bva12g01269 89 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01269 Bva-Chr12 11665649 11667223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01269 1 87 Eukaryotic Initiation Factors Gene Family AT3G11400 94.253 6.65e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01269 K03248 - zju:107410920 181.8