Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01268 ATGGCTCAATCAGCTGAACTATCGTCATCTTTGAGCTTTACATCATCTTCTTATTTACCAAATGGCTCAATTAACCACAACACATGCTCTTGTTATGGCTCTGATCCTGGACCCAACCTTGAAGTAATCAGTTTAAGTAAGCTCAGCTCTACTTTGGAGCAGCTTTTACTCGATTCTGATAGTAATTACAGTGATGCCGACATCATTGTTGAAGGAGTTCCAGTTGGTGTTCACCGTTGTATTCTGGCCTCTAGGAGTAAGTTTTTCAATGAATTATTCAAGAAGAATAAAGGATCTTCAGAGAAAGATGGCAAATTAAAGTATCACACGAGTGATTTCTTGCCTTATGGCAAGGTTGGATATGAAGCTTTCCTTATAGTCTTGGGCTATATGTATACCGGAATACCAAAGCCCTTTCCCATGGATGTGTCAACATGCGTTGACAGTGCATGTGCCCATGATGCTTGTCGACCTGCAATTAACTTTGCGGTGGAGTTGATGTATGCCTCTTCTACTTTCCAAATACCTGAGTTGGTTTCACTTTTCCAGCGACGACTTCTTAACTTTGTAGGGAAGGTTCTTGTGGAAGATGTTATCCCAATCCTTATTGTTGCTTTTCATTGTGATTTGAGTCAACTTGTCACTCAGTGCATTGATAGGGTGGCACGATCAGACCTTGACCCTATCTCTATAGAGAAAGAGCTCCCACTTGAACTCtcagagaaaatcaaattgcTCCGTCGCGGCTCCCAGAATGATGCTGAAGATAAGCATGATGCAGAAGATAATGCTTCTCTAGTGGATCCACTGCGTCAAAAGAGAATCAGTAGAATACATAAGGCACTGGACTCAGATGATGTTGAGCTTGTTAAACTTCTTTTAACTGAGTCGGATATAACCTTAGATGAAGCAAATGCTCTCCATTATGCTGCAGCTTACTGTGATCCTAAGGTTGTCTCTGAGGTACTTAGTTTGGGTCTTGCTGATGTTAACCTTAGAAATTCTCGTGGCTACACTGTGCTTCACATTGCTGCCATGCGTAAGGAACCTTCACTTATAGTATCCCTTCTTACAAAAGGGGCTTTTGTATCAGAATTGACTTTTGATGGTCAGAGTGCTGTTAGCATCTGCAGGAGGTTGACAAGGCCAAAAGATTACCATGCAAAAACTGAACAGGGgaaggaaacaaataaagatCGAATATGCATTGATGTTCTTGAAAGAGAAATGAGGAGGAATCCAATGGCTGGCGATGCTACTATATCTTTCCACACCATGGCTGATGATCTGCACATGAAGCTGCTATACCTTGAGAACAGAGTTGCATTTGCAAGATTATTCTTCCCTACGGAAGCTAAGCTAGCCATGGACATTGCTCATGCTGAGACAACAACCGAGTTTGCAGGTCTTTCTGCTTCAAAAGGTTCTAGTGGGAATTTCAGGGAGGTTGATCTAAACGAGACTCCCATAGTGCAAAACAAAAGACTTCTCTCTAGGATGGAAGCCCTCATGAAAACAGTGGAAATGGGGCGACGGTATTTTCCTCATTGCTCAGATGTGCTGGATAAGTTCATGGAGGATGACCTGCCTGATTTGTTTTACCTTGAGAAAGGCACCCAAGAAGAGCAGAGGATCAAGACGATGCGTTTCATGGAGCTTAAAGATGATGTTCAGAAGGCTTTTAACAAGGACAAGGCAGAGTTCACTCGCTGTGGCATTACATCTTCATCTAGCTCGTCATCTCTCAAAGAGACTGTAAAATACAAGGCTAGAAGACTCTG 1781 0.4172 MAQSAELSSSLSFTSSSYLPNGSINHNTCSCYGSDPGPNLEVISLSKLSSTLEQLLLDSDSNYSDADIIVEGVPVGVHRCILASRSKFFNELFKKNKGSSEKDGKLKYHTSDFLPYGKVGYEAFLIVLGYMYTGIPKPFPMDVSTCVDSACAHDACRPAINFAVELMYASSTFQIPELVSLFQRRLLNFVGKVLVEDVIPILIVAFHCDLSQLVTQCIDRVARSDLDPISIEKELPLELSEKIKLLRRGSQNDAEDKHDAEDNASLVDPLRQKRISRIHKALDSDDVELVKLLLTESDITLDEANALHYAAAYCDPKVVSEVLSLGLADVNLRNSRGYTVLHIAAMRKEPSLIVSLLTKGAFVSELTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPMAGDATISFHTMADDLHMKLLYLENRVAFARLFFPTEAKLAMDIAHAETTTEFAGLSASKGSSGNFREVDLNETPIVQNKRLLSRMEALMKTVEMGRRYFPHCSDVLDKFMEDDLPDLFYLEKGTQEEQRIKTMRFMELKDDVQKAFNKDKAEFTRCGITSSSSSSSLKETVKYKARRL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01268 593 Gene3D Potassium Channel Kv1.1; Chain A 39 222 IPR011333 -
Bva12g01268 593 Pfam BTB/POZ domain 61 135 IPR000210 GO:0005515
Bva12g01268 593 ProSiteProfiles Ankyrin repeat profile. 336 368 IPR002110 GO:0005515
Bva12g01268 593 SMART BTB_4 64 190 IPR000210 GO:0005515
Bva12g01268 593 PANTHER REGULATORY PROTEIN NPR3 10 581 IPR044292 GO:0009862|GO:2000022|GO:2000031
Bva12g01268 593 SMART ANK_2a 336 365 IPR002110 GO:0005515
Bva12g01268 593 SMART ANK_2a 273 301 IPR002110 GO:0005515
Bva12g01268 593 SMART ANK_2a 302 332 IPR002110 GO:0005515
Bva12g01268 593 Pfam Ankyrin repeats (3 copies) 279 361 IPR002110 GO:0005515
Bva12g01268 593 PANTHER REGULATORY PROTEIN NPR3 10 581 - -
Bva12g01268 593 SUPERFAMILY Ankyrin repeat 273 379 IPR036770 -
Bva12g01268 593 ProSiteProfiles BTB domain profile. 64 134 IPR000210 GO:0005515
Bva12g01268 593 Gene3D - 270 410 IPR036770 -
Bva12g01268 593 SUPERFAMILY POZ domain 49 188 IPR011333 -
Bva12g01268 593 CDD BTB_POZ_NPR_plant 47 190 - -
Bva12g01268 593 Pfam NPR1/NIM1 like defence protein C terminal 378 580 IPR021094 -
Bva12g01268 593 ProSiteProfiles Ankyrin repeat region circular profile. 336 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01268 Bva-Chr12 11662272 11665634 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bva12g01268 NPR1_like_C 8.7e-96 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01268 K14508 - gmx:100217338 959.518