Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01251 ATGGAGTTCGAGGTGAAGTTGGTGGGTGGTCTAAACAACTGTTTCGTATCCCTTCCTTTGCCTCTAATCCAAATTCTACAGTCCACACGCTCCGTGCCGCTCCCTCAACTTGTCACTCTCGAACTTCGCTCTCGCAGTGACGATATTTGGGTCGTTGCTTGGTCGGGAGCCACTTCTGCTTCTTCCGCTATTGAGGTTGCCAAACAACTTGGGGAATGCATTTTCTTGCCTGATCATACTTCAGTACAAGTGAGGGCTACTTCTAATGTGCCACATGCTTCTCTAATTACAATAGAACCTCATGCAGAGGATGACTGGGAAATTTTGGAGCTGAACTCAGAGGAAGCTGAGGCAGCAATTTTGAACCAGGTCAGGATTGTCCATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGCCACACTGTCATTACATTCCAGGTGGTTTCTGTTTTCCCCAAGAAAGCGGTGGTACAACTTATGCCAGGAACTGAAGTTGCAGTTGCTCCAAAGAGACGCATAAGAGTAACAGGTTCACGTGGAGATTCACTTTTGGATTCCAGCAATAAAGAATGTACTACAAAGATACTGCTGCGTATACAAGAGCCTGATAGGTTATGTTCAACTAGTGTTTGTGCCAAAGGTGTTGAGCTTCATACAGGGCTTACTACTGTTGCTTTTGTTCACCCAGAAACAGCCAAACAATTCTCGCTAAATATGCTTCAGTTGGTTTCCATAGTGCCAAGACCATGTAAGGAAAATGTCAATAATTCCAAAACAAATATTGTGAAAAGAAAGGGCAATTCAGCTATTAAACAAGTTGACAACGGAAGTTCAActgacaagaaagaaaatcaaccaGCAATTGTTCGTCTGTTAACTTCTGATTCAGTGGCTAAAGGCCATGTGATGCTTGCCAAGGCTCTTCGTCTCTACTTGAGAGCTGGTTTACATTCATGGGTTTATCTGAAGGCATATGATATTCCTTTGAAAAAAAGTATTCCTTCCATCTCTCTTTGTCCTTGCCACTTTGAAATCTCAAGGCGGGATgatgcttttgaaaaaaatggtCTAGAAGTTCTTCATAGCAGTAAGAATAACACAGATAGAAACATGCTCACAAGGACAACATCAGGTATATTTGTGGATACTGTAGATTGGTCTATCTATAATGAAGTTGTTGCTGCTCTTGGTGATGAATCCCATGGCAAAATGGGTGAAGAGGTTTCAAATCAGTCAGATGATCAAAATGGATTAGAGAGTTTGGTACGGTCATGGTATTTGGCACAACTAAATGCAATTACTTCCATTTCTGCAATGGAAGTTAATTCATTGGTTATAGGTAGTGAAACCTTGCTTCATTTTGAAGTAAGTCGTCTCAAGCTTGGGACTAATAGAAAGGTTCAGGCATCTTCTAATTCTtcaaagaacagaaaaatgacaactgaaatattatttgtattgaCTATCAGTGAGGAATCTCTATACCATGGAAAACTTAATGCATATGAGGTTGTTCTTGGTGAACGGAACATGATAAACAATAATGTGGCACATCCTGAGCTGTTAGAAATGCTGAAATTGGGTGATCCCATGTCTTTTCATACTATAGAAGAGAGAATCTCTGATGAACGTATTAGTTCAGATCTATCTTCCCTTGGCTGGATGGAGGCAACTGCTTCTGATGTTACTAATaGGATGTTGGTGttgttatctttttcttccgGTTTGTGGTTTGGTTCATACAAATTACCACTCCCTGGACATGTTCTAATATCTGGACCTCCAggttCTGGGAAAACTTTATTAGCAAGGACTGTTGCAAAATACTTTGAGAGACGTGAAGACATCTTAGCACACATaatatttgtttcttgctCAACACTTGCTTCAGAGAAGGTCTCCATCATCCGTCAAGAACTTGCTAACCATGTGACTGAAGCTTTAGATCATGCACCTTCCATTGTCATCTATGATGATCTAGATAGTATAATATCTACCTCTGACTCAGAAGGCTCTCAACCTACAATGTCTATTACTGGACTCACAGGTTTTCTGGTTGATATTATAGATGAACATAGGGAAAAGAGGCAAAAGTCATGTGGGTTTGGACCAATAGCCTTCATAACTTCTGTACAATCTCTAGAGAAGATACCACAATCCTTGAGCTCTTCAGGGCGGTTTGACTTTCATGTACAACTGCCTGCTCCTGCTGCTTCAGAGCGTGGGGCTATGTTAAAGCATGAAATACAAAGGCGTCACTTGCAATGTGCTGATGATATCATGCTTGACGTAGCTACTAAATGTGATGGATATGATGGATATGATCTGgaAATATTGGTTGACAGAGCTGTCCATGCTGCTGTTCATCGCTTTCTGCCATTTACTGCTGCTTCTAATGAGCATGATAATCCTACTTTACTTAGGGAGGATTTCTCTCAGGCAATGCACAATTTCCTTCCAGTTGCAATGCGTGACATTACCAAACCAGCTTCTGATGGTGGTCGTTCTGGATGGGATGATGTGGGTGGTCTTGTTGACATTCGAAATGCTATTAAGGAGATGATAGAGTTGCCTTCGAAGTTTCCAAAAACCTTTGCACAAGCTCCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGACCTCCTGGTTGTGGCAAAACTCACATAGTtggtgctgctgctgctgcctGTTCACTACGATTTATATCTGTGAAAGGGCCAGAGCTTCTGAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCCAAAGCTGCTGCTGCGGCACCATGTCTACtcttttttgatgaatttgattCTATTGCTCCCAAGAGAGGGCATGACAATACTGGAGTAACAGATCGTGTTGTAAATCAATTTCTGACTGAATTAGATGGTGTCGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCAGATTTGCTTGATGCAGCACTTTTGAGACCAGGAAGGTTAGATCGGCTTCTATTCTGTGACTTTCCATCTTGGCACGAGAGATTGGAAATTCTTACAGTGCTTTCTAGAAAGTTACCAATGGCCAGTGATGTTGATTTGAATGCGGTAGCTCATATGACGGAGGGATTTAGTGGAGCTGACCTTCAGGCTCTTCTCTCAGATGCACAGCTTGCAGCAGTTCATGAAGTTCTGAACAATGTGGACTCATCTAGGCCGGAGAAGAAGCCAGTTATTACAGATGCTCATCTGAAGTCAACTGCCTACAAGGCTAGACCATCTGTTTCAGACGAGGAGAAACAACGGCTCTACGGCATTTATAGCCAGTTCCTGGATTCAAAGAAATCGGTTGCTCATCAGACGAGAGATGCTAAAGGCAAGAAGGCAACTCTAGCATG 3389 0.4028 MEFEVKLVGGLNNCFVSLPLPLIQILQSTRSVPLPQLVTLELRSRSDDIWVVAWSGATSASSAIEVAKQLGECIFLPDHTSVQVRATSNVPHASLITIEPHAEDDWEILELNSEEAEAAILNQVRIVHEGMRFPLWLHGHTVITFQVVSVFPKKAVVQLMPGTEVAVAPKRRIRVTGSRGDSLLDSSNKECTTKILLRIQEPDRLCSTSVCAKGVELHTGLTTVAFVHPETAKQFSLNMLQLVSIVPRPCKENVNNSKTNIVKRKGNSAIKQVDNGSSTDKKENQPAIVRLLTSDSVAKGHVMLAKALRLYLRAGLHSWVYLKAYDIPLKKSIPSISLCPCHFEISRRDDAFEKNGLEVLHSSKNNTDRNMLTRTTSGIFVDTVDWSIYNEVVAALGDESHGKMGEEVSNQSDDQNGLESLVRSWYLAQLNAITSISAMEVNSLVIGSETLLHFEVSRLKLGTNRKVQASSNSSKNRKMTTEILFVLTISEESLYHGKLNAYEVVLGERNMINNNVAHPELLEMLKLGDPMSFHTIEERISDERISSDLSSLGWMEATASDVTNRMLVLLSFSSGLWFGSYKLPLPGHVLISGPPGSGKTLLARTVAKYFERREDILAHIIFVSCSTLASEKVSIIRQELANHVTEALDHAPSIVIYDDLDSIISTSDSEGSQPTMSITGLTGFLVDIIDEHREKRQKSCGFGPIAFITSVQSLEKIPQSLSSSGRFDFHVQLPAPAASERGAMLKHEIQRRHLQCADDIMLDVATKCDGYDGYDLEILVDRAVHAAVHRFLPFTAASNEHDNPTLLREDFSQAMHNFLPVAMRDITKPASDGGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMASDVDLNAVAHMTEGFSGADLQALLSDAQLAAVHEVLNNVDSSRPEKKPVITDAHLKSTAYKARPSVSDEEKQRLYGIYSQFLDSKKSVAHQTRDAKGKKATLA 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01251 1129 CDD AAA 582 734 - -
Bva12g01251 1129 Gene3D - 534 736 IPR027417 -
Bva12g01251 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 816 IPR027417 -
Bva12g01251 1129 CDD AAA 842 1005 - -
Bva12g01251 1129 Gene3D - 1007 1086 - -
Bva12g01251 1129 Gene3D - 837 1099 IPR027417 -
Bva12g01251 1129 SUPERFAMILY ADC-like 10 87 IPR009010 -
Bva12g01251 1129 ProSitePatterns AAA-protein family signature. 976 994 IPR003960 GO:0005524|GO:0016887
Bva12g01251 1129 PANTHER AAA-FAMILY ATPASE 3 1126 - -
Bva12g01251 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1099 IPR027417 -
Bva12g01251 1129 SMART AAA_5 872 1008 IPR003593 -
Bva12g01251 1129 SMART AAA_5 585 737 IPR003593 -
Bva12g01251 1129 Pfam ATPase family associated with various cellular activities (AAA) 589 734 IPR003959 GO:0005524|GO:0016887
Bva12g01251 1129 Pfam ATPase family associated with various cellular activities (AAA) 876 1003 IPR003959 GO:0005524|GO:0016887
Bva12g01251 1129 Gene3D - 737 825 - -
Bva12g01251 1129 Gene3D - 90 170 - -
Bva12g01251 1129 PANTHER - 3 1126 - -
Bva12g01251 1129 Pfam AAA+ lid domain 1028 1066 IPR041569 -
Bva12g01251 1129 SUPERFAMILY Cdc48 domain 2-like 91 169 IPR029067 -
Bva12g01251 1129 Pfam Peroxisome biogenesis factor 1, N-terminal 96 169 IPR015342 GO:0005524|GO:0005777|GO:0007031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01251 Bva-Chr12 11607434 11617645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01251 586 838 Calmodulin-binding Proteins AT3G56690 28.464 2.07e-15 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01251 K13338 - gmx:100803882 1656.34