Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01248 ATGGAGGATTCAGAGGGGGGCCTCAGCTTCGACTTCGAGGGCGGCCTTGACGCCGCTCCGCCCAACCCCGCCGCGACTGGACCCGTGGTCCAATCTGATTCTTCTGCCATAGCTAACGGTGCCGCCGCCGGAACCACTGCCGCACCTGCCACCGATCATGCTGCAGGAAATATCCCCGGGCGGCGGAGCTTTCGTCAAACGGTGTGCCGGCACTGGCTTCGTAGCCTCTGCATGAAAGGTGATGCCTGCGGCTTCTTACACCAGTATGACAAGTCCCGGATGCCCGTTTGTCGGTTTTTCAGATTGTACGGGGAGTGTCGCGAGCAGGATTGCGTGTATAAGCATACAAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCCAATGGTCCTGATTGCCGGTATAGGCATGCAAAGACACCTGGACCTCCCCCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAGCATTTATATTCTCACAACAAGttttatcaacaaaggaaCTCTGGCTATCCTCAACAAGCTGAGAAATCCCACTTTCCACAAGGTCCAAATCCTACAAATCATGATGTGACCGGAAAGCTGGTAACTTCAGAGTCGGGCAATGtccagcagcagcaacaaatTCCACAGTCACAGCAGCAGGTTAGCCAGAACCAAAGCCAAAATCTTCCTAATGGCCAGCCCAATCAAGCCAACCAAACTGCAATACCTTTACCTCAAGGAATATCTAGgtattttatagttaaaagtTGCAACCGTGAAAATTTTGAGCTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAACAATGAAGCTAAACTGAATGAGGCCTTTGATTCAGTGGAAAATGTGATATTGATTTTCTCAGTCAACCGAACTCGACATTTCCAGGGTTGCGCAAAGATGACATCCAGAATTGGTGGGTCTGTTCCTGGGGGAAACTGGAAATATGGACATGGAACTGCACATTACGGGCGGAATTTTTCAGTTAAATGGTTAAAGTTATGTGAGCTGTCCTTCCACAAGACTAGGCATTTAAGGAATCCATACAACGAAAACTTACCTGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGCGAACAGTTGGCCTCCTTACTTTATCTTGAGCCTGATAGTGAACTCATGGCTGTCTCTTTAGCAGCAGAGTCTAAacgtgaagaagaaaaagcaaagggGGTCAATCCAGATGAAGGCGGAGAAAATCCAGATATTGTCCCATTTGAGGAcaatgaagaagaggaagaagaagaaagtgatgAAGACGAGGAGAACTTTGGTCCTGGTCTTGGGCCAGCCACTCAAGGAAGAGGGAGGGGCAGAGGTATGATGTGGCCTCCCCACATGGCTATGGGACGAGGAGCCAGACCTATGCCTGGAATGCAGGGTTTTCCCCCAGTAATGATGGGTGAGGGATTATCCTATGGCCCTGTTACACCCGATGGCTTTGGCATGCCAGATCTTTTTGGTGTAGGACCCCGTGGTTTTGCTCCATATGGTCCTAGGTTCTCTGGTGATTTTGCAGGTCCCCCAGCAACCATGATGTTTCGTGGACGACCTTCACAACCTGGGATGTTTCCAGGTGGTGGGTTTGGGATGATGATGAATCCAGGACGTGCCCCTTTTATGGGGGGCATGGGGGTTCCGGGTGCAAATCCATCACGCGCCGGTAGGCCAGTTGTCATGCCTCCAATGTTTCCACCACATCCACCACCACCTTCTCAAAATACCAACCGTGTGGTAAAGAGGGATCAAAGAGCTAATGACAGGTATGGTTCAGGATTAGAGCAGGGTAAGGGTCCAGACTTAGCAAGTGATGATGACACACAGCACCGGCAAGGATACAAGGCACACCAGGAAGATCAATATGCTTCTGTGAACAACTTTAGGAATGAGGAGAGTGAAAGTGAAGATGAGGCTCCACGGAGGTCAAGACATGGAGagggcaaaaagaaaaggcaaggTGTTAACACTTA 2024 0.4659 MEDSEGGLSFDFEGGLDAAPPNPAATGPVVQSDSSAIANGAAAGTTAAPATDHAAGNIPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKTPGPPPPVEEVLQKIQHLYSHNKFYQQRNSGYPQQAEKSHFPQGPNPTNHDVTGKLVTSESGNVQQQQQIPQSQQQVSQNQSQNLPNGQPNQANQTAIPLPQGISRYFIVKSCNRENFELSVQQGVWATQRNNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVPGGNWKYGHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAESKREEEKAKGVNPDEGGENPDIVPFEDNEEEEEEESDEDEENFGPGLGPATQGRGRGRGMMWPPHMAMGRGARPMPGMQGFPPVMMGEGLSYGPVTPDGFGMPDLFGVGPRGFAPYGPRFSGDFAGPPATMMFRGRPSQPGMFPGGGFGMMMNPGRAPFMGGMGVPGANPSRAGRPVVMPPMFPPHPPPPSQNTNRVVKRDQRANDRYGSGLEQGKGPDLASDDDTQHRQGYKAHQEDQYASVNNFRNEESESEDEAPRRSRHGEGKKKRQGVNT 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01248 674 Gene3D - 58 121 - -
Bva12g01248 674 MobiDBLite consensus disorder prediction 617 634 - -
Bva12g01248 674 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Bva12g01248 674 MobiDBLite consensus disorder prediction 11 31 - -
Bva12g01248 674 MobiDBLite consensus disorder prediction 397 413 - -
Bva12g01248 674 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Bva12g01248 674 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Bva12g01248 674 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Bva12g01248 674 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 670 IPR045168 -
Bva12g01248 674 Pfam YT521-B-like domain 248 310 IPR007275 GO:0003723
Bva12g01248 674 Pfam YT521-B-like domain 327 382 IPR007275 GO:0003723
Bva12g01248 674 MobiDBLite consensus disorder prediction 419 441 - -
Bva12g01248 674 Gene3D ph1033 like domains 228 386 - -
Bva12g01248 674 ProSiteProfiles YTH domain profile. 248 383 IPR007275 GO:0003723
Bva12g01248 674 SUPERFAMILY CCCH zinc finger 63 93 IPR036855 GO:0046872
Bva12g01248 674 MobiDBLite consensus disorder prediction 576 591 - -
Bva12g01248 674 MobiDBLite consensus disorder prediction 647 661 - -
Bva12g01248 674 MobiDBLite consensus disorder prediction 397 461 - -
Bva12g01248 674 MobiDBLite consensus disorder prediction 565 674 - -
Bva12g01248 674 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 670 - -
Bva12g01248 674 MobiDBLite consensus disorder prediction 174 240 - -
Bva12g01248 674 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01248 Bva-Chr12 11591159 11596823 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva12g01248 YTH 3.8e-44 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01248 K14404 - gmx:100802826 1062.37