Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01244 ATGTTGGGTGGGCTATATGGAGACCTCCCTCCACCTTCTTCTgctgaagaagagaaaaccaGCAACACCAATGTATGGTCAAGCAGCATGAAGATGGCTCCGGCCACTCTGCGAAAGCCGGCGTCAGTTTTTGCACCTCCACAAACGGTTCTGCGATCTCAAAGCAAACCCAAAGCTGTGAATTCTTCTGTCTCCAAAACAGTAACATCAACGCCGGTTGCAGTAGCACCGTCGCCGGTGGGAGCTGATGATGTGGCGCAACCGCACCCAGCTCTTGTGGGTGTCCAATCGACGGTGATAGAGGAGTATGACCCGGCTAGGCCGAATGACTATGAAGAATATAGGagggagaagaagaggaaggcCAGGGAGGCAGAGATGATGAAAGAGCTTGAAAAGAGACggcaagaggaagaagagagggagagaaggGAGAGAGAAGAGCGAGAGAGGGAAAGAGATAGGGAAGGGGAATATGGGGATTCAGGATTGAATATATCAGGTGAGGAGGCATGGAGAAGGCGTGCAGCAATGAGTGGAGCAGCTCCACGGTCGCCGTCTCCTCCAAGTACTGGAGACGGTTTTACCATTGGGAAGTCAGAAACTGGTGGATTGGGCCTGGGTGCTGGTGGGCAAATGACTGCAGCTCAGAGAATGATGGCTAAGATGGGATGGAAACAAGGGCAAGGGCTTGGGAAGCAGGAGCAAGGAATTACTACTCCTTTGATGGCCAGGAAAACAGATAGAAGAGCTGGAGTTATAGTGAATGCTAGTGATAACAAGCCCGAGAAGAAAGTGAAGAGTGTAAACTTCAATGGACCGCCTACACGGGTGCTATTGCTTAGAAACATGGTGGGCCCTGGCGAAGTTGATGATGAATTGGAAGAGGAGGTAGGATCAGAATGTGGCAAGTATGGAACAGTGACCAGGGTTCTTATATTTGAGATAACAGAGCCAAATTTCCCTTCAGATGAAGCAGTAAGAATCTTTGTCCAGTTTGAAAGATCTGAAGAAACAACTAAATCTATTATCGATCTTGATGGTCGATATTTTGGAGGTAGAGTGGTGCGTGCCACATTTTACGACGAGGAGAGATTTGGCCGGAATGAGTTAGCTCCAATGCCTGGAGAAATTCCCGGCTTCTTTTG 1148 0.4608 MLGGLYGDLPPPSSAEEEKTSNTNVWSSSMKMAPATLRKPASVFAPPQTVLRSQSKPKAVNSSVSKTVTSTPVAVAPSPVGADDVAQPHPALVGVQSTVIEEYDPARPNDYEEYRREKKRKAREAEMMKELEKRRQEEEERERREREERERERDREGEYGDSGLNISGEEAWRRRAAMSGAAPRSPSPPSTGDGFTIGKSETGGLGLGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMARKTDRRAGVIVNASDNKPEKKVKSVNFNGPPTRVLLLRNMVGPGEVDDELEEEVGSECGKYGTVTRVLIFEITEPNFPSDEAVRIFVQFERSEETTKSIIDLDGRYFGGRVVRATFYDEERFGRNELAPMPGEIPGFF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01244 382 MobiDBLite consensus disorder prediction 46 211 - -
Bva12g01244 382 PANTHER SPLICING FACTOR 45 SPF45 1 373 IPR040052 GO:0045292
Bva12g01244 382 CDD RRM_UHM_SPF45 275 371 IPR034653 -
Bva12g01244 382 Gene3D - 276 362 IPR012677 -
Bva12g01244 382 SMART rrm2_1 278 359 IPR003954 GO:0003676
Bva12g01244 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 363 IPR000504 GO:0003723
Bva12g01244 382 SUPERFAMILY RNA-binding domain, RBD 280 365 IPR035979 GO:0003676
Bva12g01244 382 Pfam G-patch domain 215 254 IPR000467 GO:0003676
Bva12g01244 382 ProSiteProfiles G-patch domain profile. 212 258 IPR000467 GO:0003676
Bva12g01244 382 MobiDBLite consensus disorder prediction 105 160 - -
Bva12g01244 382 Coils Coil 111 155 - -
Bva12g01244 382 PIRSF SPF45 3 378 IPR040052 GO:0045292
Bva12g01244 382 MobiDBLite consensus disorder prediction 1 27 - -
Bva12g01244 382 MobiDBLite consensus disorder prediction 47 74 - -
Bva12g01244 382 SMART G-patch_5 210 256 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01244 Bva-Chr12 11568447 11571572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01244 218 253 C2H2 Transcription Factor Family AT5G26610 61.111 1.01e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01244 K12840 - zju:107418861 478.404