Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01237 ATGAGTTCAGAAATTATGACTTCTACTGCTCATGACCTTACTGATAATCAAGCTAATGAGCAGCAGAAGCAGTCAGAGTCACAGGTTCACTCTTCATCTGCTAATGGAATCAGTCATCCTGGTATTGCTTCCCAGAATGTTCAGTATGCATCACCTCCTCAGCTTGGAACTGGGCATGTCATGGCACCATCTGTTTACCCATATCCGGATCCATACTATAGAAGCATCTTTGCTCCTTATGAATCACAGCCTTACCCCCCACAACCTTACGGTGGACAGCCAATGGTCCATCTTCAGCTCATGGGAATTCAACAAGCTGGTGTTCCTCTGCCAACTGACGCAGTTGATGAGCCTGTGTTTGTCAATGCAAAACAATATCATGGCATATTAAGACGGAGGCAGTCTCGTGCTAAAGCggaatcagaaaaaaaagCTATCAGGAATAGAAAGCCGTACTTGCATGAATCTCGACATTTGCATGCATTAAGAAGAGCAAGAGGATGTGGAGGTCGATTTCTGAATTCAAAGAAGGATGACGAACAACAAAAAGAGGTGGCATCAACCAACGAAACACAATCCAATGGCAGTCTCAATTCTGATAGAAATGATCTTGCTTCATCTGATAGGACGTCCTA 635 0.4299 MSSEIMTSTAHDLTDNQANEQQKQSESQVHSSSANGISHPGIASQNVQYASPPQLGTGHVMAPSVYPYPDPYYRSIFAPYESQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVDEPVFVNAKQYHGILRRRQSRAKAESEKKAIRNRKPYLHESRHLHALRRARGCGGRFLNSKKDDEQQKEVASTNETQSNGSLNSDRNDLASSDRTS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01237 211 MobiDBLite consensus disorder prediction 186 205 - -
Bva12g01237 211 MobiDBLite consensus disorder prediction 134 149 - -
Bva12g01237 211 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 117 172 IPR001289 GO:0003700|GO:0006355
Bva12g01237 211 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 6 193 - -
Bva12g01237 211 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 193 IPR001289 GO:0003700|GO:0006355
Bva12g01237 211 MobiDBLite consensus disorder prediction 169 211 - -
Bva12g01237 211 ProSitePatterns NF-YA/HAP2 subunit signature. 120 140 IPR018362 GO:0003677|GO:0016602
Bva12g01237 211 ProSiteProfiles NF-YA/HAP2 family profile. 115 175 IPR001289 GO:0003700|GO:0006355
Bva12g01237 211 MobiDBLite consensus disorder prediction 171 185 - -
Bva12g01237 211 PRINTS CCAAT-binding transcription factor subunit B signature 118 140 IPR001289 GO:0003700|GO:0006355
Bva12g01237 211 PRINTS CCAAT-binding transcription factor subunit B signature 149 172 IPR001289 GO:0003700|GO:0006355
Bva12g01237 211 MobiDBLite consensus disorder prediction 1 53 - -
Bva12g01237 211 MobiDBLite consensus disorder prediction 134 153 - -
Bva12g01237 211 MobiDBLite consensus disorder prediction 1 54 - -
Bva12g01237 211 SMART cbf3 114 175 IPR001289 GO:0003700|GO:0006355
Bva12g01237 211 Gene3D - 115 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01237 Bva-Chr12 11526577 11529869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01237 6 211 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.488 9.07e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bva12g01237 CBFB_NFYA 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01237 K08064 - gmx:100809036 333.183