Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01235 ATGTCAATCAATCGGCATGCCTCGGgtaaaagaagaataagagaTCTATTGCTTCAAAGTGATAATCGCTTTTGTGCTGATTGTAATGCTCCAGACCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTAAAATGTTGTGGCGTGCACAGAAGTCTTGGCAGTCATATATCTAAGGTGTTGTCGGTGGCATTGGATGATTGGGCGGAAGATGAAATAGATTCAATGATTGAAGTTGGAGGGAATTCTGCTGCTAATTCAATTTACGAGGCTTATATTCCAGAAGGATACACAAAGCCTGGACGAGATGCCAGTCACGAGCTGCGTGCCAAATTTATCCGGGCAAAGTATGAGcttcaagaatttttaaaacctCATTTGCGCATTGGGTCTGGAAAAAACGCTAAACAAAGCTCCCTACAACCAAGTCTTTCCCAAGAGAATGCGAGTAGTTTACGAAGCAGCAGCAGTAGTTCACAGAAAGCGGACGGCATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTAATTAAAGGCACAGATTTAGCTGTCAGAGATATGAGGACAAGTGATCCTTATGTTGTCTTGAATCTCGGCCAGCAgACTGTTCAGACAACTGTAATACATAGTAACTTGAATCCAGTCTGGAATGAGGAACTTATGCTCTCTGTTCCTCAAGATTATGGTCCATTGAAATTGCAAGTATACGATTATGACACATTCTCGGCAGATGATATAATGGGAGAAGCAGACATTGATATCCAGCCCCTGATAACATCTGCAATGTCATTTGGAGATGCAGGAATGTTTGGAAATATGCAGATAGGGAAGTGGCTGAATTCCCATGACAATGCACTCATAGATGATAGCGCAGTCAATATTGTCGAAGGTAAGATTAAACAGGCAATGTCACTCAAGCTTCAGAACGTAGAATGTGGAGAATTAGACTTGGAGCTTGAGTGGCTCCCTCTTGAACAATA 986 0.4037 MSINRHASGKRRIRDLLLQSDNRFCADCNAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVALDDWAEDEIDSMIEVGGNSAANSIYEAYIPEGYTKPGRDASHELRAKFIRAKYELQEFLKPHLRIGSGKNAKQSSLQPSLSQENASSLRSSSSSSQKADGMVEFIGMLKVKVIKGTDLAVRDMRTSDPYVVLNLGQQTVQTTVIHSNLNPVWNEELMLSVPQDYGPLKLQVYDYDTFSADDIMGEADIDIQPLITSAMSFGDAGMFGNMQIGKWLNSHDNALIDDSAVNIVEGKIKQAMSLKLQNVECGELDLELEWLPLEQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01235 328 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 124 IPR001164 GO:0005096
Bva12g01235 328 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Bva12g01235 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 328 - -
Bva12g01235 328 CDD ArfGap 13 119 - -
Bva12g01235 328 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Bva12g01235 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 328 IPR044518 GO:0005096|GO:0005543
Bva12g01235 328 PRINTS C2 domain signature 188 200 IPR000008 -
Bva12g01235 328 PRINTS C2 domain signature 233 241 IPR000008 -
Bva12g01235 328 PRINTS C2 domain signature 212 225 IPR000008 -
Bva12g01235 328 Gene3D C2 domain 170 328 IPR035892 -
Bva12g01235 328 MobiDBLite consensus disorder prediction 134 160 - -
Bva12g01235 328 Pfam C2 domain 173 262 IPR000008 -
Bva12g01235 328 SMART arf_gap_3 12 132 IPR001164 GO:0005096
Bva12g01235 328 ProSiteProfiles C2 domain profile. 154 269 IPR000008 -
Bva12g01235 328 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 168 266 IPR035892 -
Bva12g01235 328 SMART C2_3c 173 268 IPR000008 -
Bva12g01235 328 CDD C2_ArfGAP 171 315 - -
Bva12g01235 328 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Bva12g01235 328 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Bva12g01235 328 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Bva12g01235 328 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01235 Bva-Chr12 11520505 11524726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01235 3 328 C2H2 Transcription Factor Family AT4G21160 71.515 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01235 K12486 - gmx:100810806 492.271