Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01213 ATGGGGAGGAGACCTGCCAGATGTTACCGTCAGATAAAGAACAAGCCATACCCGAAATCTCGTTTCTGTCGGGGTGTTCCTGACCCAAAGATCAGGATTTATGATgttggaatgaaaaagaagggtGTTGATGAGTTCCCATTCTGTGTGCATCTGGTGTCTTGGGAAAAAGAGAATGTTTCAAGTGAAGCTCTTGAGGCTGCCCGTATTGCATGCAACAAATACATGGCCAAGTTTGCGGGGAAGGATGCTTTCCATTTGCGAGTCAGGGTGCATCCTTTCCATGTCCTGCGAATCAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACAGGGATGAGAGGCGCTTTTGGAAAGCCACTAGGAACTTGTGCTAGAGTGAACATTGGCCAGGTCCTCCTTTCTGTTCGTTGCAAGGACAGCAACAGCCATCATGCCCAGGAGGCTCTTCGTCGTGCCAAATTCAAGTTTCCTGGTCGTCAAAAGATCATTGTTAGCAGAAAGTGGGGATTTACTAAATACAACCGGGCTGATTATTTGAAGTTGAAATCAGAGAACCGAGTTGTGCCAGATGGGGTCAATGCCAAGGTTCTTGGGTGCCATGGACCTTTGTCATTGCGACAGCCAGGAAGAGCCTTTTTGCCTGCTACAGCTTA 662 0.4653 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVNIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKYNRADYLKLKSENRVVPDGVNAKVLGCHGPLSLRQPGRAFLPATA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01213 220 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Bva12g01213 220 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Bva12g01213 220 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Bva12g01213 220 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Bva12g01213 220 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Bva12g01213 220 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 219 - -
Bva12g01213 220 Gene3D Ribosomal protein L10e/L16 1 215 IPR036920 GO:0003735|GO:0005840|GO:0006412
Bva12g01213 220 PANTHER 60S RIBOSOMAL PROTEIN L10 1 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
Bva12g01213 220 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01213 Bva-Chr12 11416299 11418765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01213 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.818 2.24e-144 400