Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01212 ATGTGTCCTTCAAATGGTTGGAAGTGCAAAGTGGCTTTTAGTGTGTGGTTCTGTTGCTATTTGCTACTTGTTGCTGCGCAGGAAAATGCTATCACTGACCCCGTAGAAGTTCACGCATTGACAGCCATCAGGGAAAGTTTGATTGATCCTAATGGAAATCTGAGTAACTGGAATAGTGGAGATCCTTGTACATCAAATTGGACAGGAGTCAATTGCTTCAATTCAACATTAGGCACCGGTTATCAACATGTCCATGAATTGCGACTCATGAAGTATAGTTTAGCTGGAAGCATATCACCAGAGATTGGCCGCTTATCATATGCGGAAATATTGAACTTCATGTGGAATAACATAACTGGGAGTATACCAAAGGAAATCGGCAATATCACAAGTTTGGTGCTTTTgcTCCTCAATGGAAATCAATTAACAGGCTCGCTGCCAGAAGAGCTTGGATATCTTCCAAACCTGGACAGGATACAGATCGATCAAAACAATATATCAGGACCTCTGCCTAAATCATTTGCAAACCTGAACATGACAAAGCACTTTCACATGAACAACAATTCAATTAGCGGGCAAATCCCATCAGAACTTTCCCAATTGCCAAATCTTGTTCATCTCCTACTCGACAATAACAACTTATCAGGACCTCTTCCCCCTCAGCTCTCTGAGACGCCGAACTTGCGTATAATTCAACTTGATAACAACAAGTTTGAAGGGACCATTCCAGAGTCATATGGCAGCAtgccaaaaattttgaaattGAGTCTTCGAAACTGCAGTTTACAAGGGCAAATACCTGATTTAAGTGGGATTCCATACCTCTATTATCTTGATCTCAGTTTCAATCAGTTGAACGGATCCATTCCTTCCAATAAGCTTTCTGGAAACGTAACAACTATTGATTTATCAAACAACAGACTCAGTGGAACTATTCCATCcaacttttcttctcttacaCGTCTTCAGAGATTGTCAATTTCGAACAATATCTTGAATGGTAGTGTTTCTTCCTCCCTTTGGCAGAACAGAAATTCAGATCAAACCGGAGCACTTGTCTTGGAGctgcaaaataataattttacaaatgtATCAGGCAGTACCGATCTTCCTTCAAATGTCACACTGTGGCTTCAGGGAAATCCTCTATGCTCAAGTACCACATTATCTCAGTTCTGTGGTTCTGAAAGTAACAACAACAGTGCTGTTCCAACGGGTTCCAATATAACTTGTCAAGATCAGTCATGCCCTCCTCCATATGAATATTCTGAATCGTCCCCTACAGAATGTTACTGTGCAGCTCCATTACTCATTGGTTATCGGTTGAAGAGTCCTGgattttttgaatttcctCCATACCGGAGTACATTTGAGACTTACCTGACTACTGGTCTCAGTTTACAAATTAAGCAGCTGTATATTGATTCATTTATGTGGCAAAGTGGACCTAgactgaaaatgtatttgaaACTTTATCCTTTATATGAGAACAACGGCACTCATACTTTCAACAGTAGTGAACTTCAACGGCTCATAGACATGTTTACGGGGTGGGGAATTCCTGACAGTGACTTGTTTGGGCCTTACGAACTGCTCAACATTACTCTTCTGGCTCCTTACAGGGGTGTTACTATCGTCACTTCAAGCTCAGGAGGGATAAGCAAGGGAGCACTGGCTGGTATCATCATAGGGGCGATTGCCTGTGCAGTTACATTATCTGCAATTGTAACTCTCCTTATATTGAGAATGCGCATGAAAAACTACCATGCAGTTTCAAAACGACGTCACTCATCTAAGATCTCAATCAAAATTGATGGTGTAAGGGCCTTAACTTATGAAGAAATGACCTTGGCTACGAACAATTTTAGCAGCTCTGCTCAAGTTGGTCAAGGAGGATACGGGAATGTCTATAAAGGTGTTCTTGCTGATGGCACGGTTGTTGCTATAAAACGTGCACAGGAGGGATCACTGCAAGGTGAGAGAGAGTTCCTAACAGAAATACAACTACTATCAAGGGTACATCATCGCAACCTCGTATCTTTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCAAATGGCACGCTAAGGGATCACCTCTCTGCTTATTCCAAAGACCCTCTTAGTTTTGGCATGAGATTAAGGATTGCTTTAGGCTCAGCCAAGGGTATTCTGTATCTTCACACAGAAGCTGATCCTCCAATATTCCACCGAGATATTAAGGCTAGCAACATATTATTAGACCCTAAATTAACAGCAAAAGTTGCCGATTTTGGACTTTCTCGGCTTGCTCCAGTTCCAGATCTTGAAGGAGTTGTGCCTAATCATGTTTCTACAGTGGTAAAGGGAACACCGGGTTATCTTGATCCAGAGTACTTCTTAACTCATAAACTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTCTTTTTGGAACTCTTGACTGGGATGCAGCCTATCTCACATGGGAAAAACATTGTTAGAGAGGTCAACGTTGCATACCAATCTGGTGCAGTATTCTCAGTTATTGATGAACGCATGGGGGCTTACCCTTCTGACTGCGTAGAGAAATTTCTGTCTTTGGCCCTAAGGTGTTGCAGAGATGAACCAGATGCACGACCAAAAACGGTAGAAGTGGTTCGAGAACTTGAGAACATATGGGCCATGATGCCTGAGTCAGATGCCAAgaaatctgaaattttaagCACTGATTCTGGAAAAAGTAAATCATTCAGTTCACCACCTTCTTCTTCTACTTCCATAAAAAATCAGCCTTTCATATCTGGAGATATTTCTGGTAGTGACCTTGTCAGTGGTGTGGTACCAGAAATCACGCCAAGATA 2867 0.4036 MCPSNGWKCKVAFSVWFCCYLLLVAAQENAITDPVEVHALTAIRESLIDPNGNLSNWNSGDPCTSNWTGVNCFNSTLGTGYQHVHELRLMKYSLAGSISPEIGRLSYAEILNFMWNNITGSIPKEIGNITSLVLLLLNGNQLTGSLPEELGYLPNLDRIQIDQNNISGPLPKSFANLNMTKHFHMNNNSISGQIPSELSQLPNLVHLLLDNNNLSGPLPPQLSETPNLRIIQLDNNKFEGTIPESYGSMPKILKLSLRNCSLQGQIPDLSGIPYLYYLDLSFNQLNGSIPSNKLSGNVTTIDLSNNRLSGTIPSNFSSLTRLQRLSISNNILNGSVSSSLWQNRNSDQTGALVLELQNNNFTNVSGSTDLPSNVTLWLQGNPLCSSTTLSQFCGSESNNNSAVPTGSNITCQDQSCPPPYEYSESSPTECYCAAPLLIGYRLKSPGFFEFPPYRSTFETYLTTGLSLQIKQLYIDSFMWQSGPRLKMYLKLYPLYENNGTHTFNSSELQRLIDMFTGWGIPDSDLFGPYELLNITLLAPYRGVTIVTSSSGGISKGALAGIIIGAIACAVTLSAIVTLLILRMRMKNYHAVSKRRHSSKISIKIDGVRALTYEEMTLATNNFSSSAQVGQGGYGNVYKGVLADGTVVAIKRAQEGSLQGEREFLTEIQLLSRVHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSAYSKDPLSFGMRLRIALGSAKGILYLHTEADPPIFHRDIKASNILLDPKLTAKVADFGLSRLAPVPDLEGVVPNHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNVAYQSGAVFSVIDERMGAYPSDCVEKFLSLALRCCRDEPDARPKTVEVVRELENIWAMMPESDAKKSEILSTDSGKSKSFSSPPSSSTSIKNQPFISGDISGSDLVSGVVPEITPR 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01212 955 Pfam Protein kinase domain 624 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01212 955 SMART serkin_6 622 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01212 955 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Bva12g01212 955 Gene3D Ribonuclease Inhibitor 188 294 IPR032675 -
Bva12g01212 955 CDD STKc_IRAK 628 894 - -
Bva12g01212 955 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Bva12g01212 955 Gene3D Phosphorylase Kinase; domain 1 592 697 - -
Bva12g01212 955 SUPERFAMILY Protein kinase-like (PK-like) 608 906 IPR011009 -
Bva12g01212 955 MobiDBLite consensus disorder prediction 912 939 - -
Bva12g01212 955 MobiDBLite consensus disorder prediction 905 955 - -
Bva12g01212 955 Gene3D Ribonuclease Inhibitor 295 384 IPR032675 -
Bva12g01212 955 Gene3D Ribonuclease Inhibitor 35 187 IPR032675 -
Bva12g01212 955 ProSiteProfiles Protein kinase domain profile. 622 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01212 955 SUPERFAMILY L domain-like 45 401 - -
Bva12g01212 955 Gene3D Transferase(Phosphotransferase) domain 1 698 915 - -
Bva12g01212 955 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 928 - -
Bva12g01212 955 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524
Bva12g01212 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Bva12g01212 955 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 10 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01212 Bva-Chr12 11406746 11414743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01212 12 904 Receptor kinase-like Gene Family AT5G01950 59.867 0.0 1030
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Bva12g01212 Pkinase 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01212 - - tcc:18591108 1326.61