Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01206 ATGTCCTTACAATCCACTGAGATGCCCCAGCAGCGCAAGCCTGCAACTCCAAGTACCCTTTCTGGGGATGTGAGTTCTTGCAGCAACCCAATATGCAAAATTAGGAGAAAATCTCATCAAAAGCTAGTGAGGATCATACTCACTGACCATGACGCTACTGATACGGACTCCTCCACTGATGAAATGCAAGAAATCCCAGTGAGAATCCGAAGAGTCAAGCGACAAGTTACTCAGATCAGCATGGAGCTTTCTGTCACAGATTCTCCTTCCTCTTCTCCCTGttgttcttcctcttcctctgctAAACAGGACCCAACCCATATTAAGAAGCCCAAGAAATTACCCAACTGCAACGCCTCCTCTCGGCACCATAACAAGTTCAGGGGGGTTCGCCAGCGGCCTTGGGGCAAATGGGCCGCCGAGATACGGGATCCAATCCGAAGGAAGCGGGTCTGGCTTGGAACATTCGATACGGCGGAGGAAGCAGCCACCGTGTACGATAATGCTGCGCTGAAGTTGAAGGGTCCTAAAGCCGTTACGAATTTCCCCAACACCATGATGACGGAGGTGGAAACGGAAGAAGCGCCGGTTGAAGTTAGCAGTCCAAGCACCGACGGTTTCGTCTCCTCCGACAGGGTTGCTTCACCCACGTCCGTCCTGCCTTCCGACGGCGAATCAACTCCGTTCGACGGTTTCTGTTTCGGCGACGTCGATGCATTCGGTTTCAAAATCGATGTGCCGTTAAGTGTGCCGGACATGAATATGATGCTGTCGAGCCAGCAGTTCGGGAAGGTAGAGTTCGGCGAGTTTGACATCGACGATTTTTTCTCATGTCCCAACTA 842 0.5036 MSLQSTEMPQQRKPATPSTLSGDVSSCSNPICKIRRKSHQKLVRIILTDHDATDTDSSTDEMQEIPVRIRRVKRQVTQISMELSVTDSPSSSPCCSSSSSAKQDPTHIKKPKKLPNCNASSRHHNKFRGVRQRPWGKWAAEIRDPIRRKRVWLGTFDTAEEAATVYDNAALKLKGPKAVTNFPNTMMTEVETEEAPVEVSSPSTDGFVSSDRVASPTSVLPSDGESTPFDGFCFGDVDAFGFKIDVPLSVPDMNMMLSSQQFGKVEFGEFDIDDFFSCPN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01206 280 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Bva12g01206 280 MobiDBLite consensus disorder prediction 82 104 - -
Bva12g01206 280 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Bva12g01206 280 MobiDBLite consensus disorder prediction 82 122 - -
Bva12g01206 280 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Bva12g01206 280 MobiDBLite consensus disorder prediction 197 222 - -
Bva12g01206 280 PIRSF PTI6 18 280 IPR017392 GO:0003700
Bva12g01206 280 CDD AP2 126 185 IPR001471 GO:0003700|GO:0006355
Bva12g01206 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 275 - -
Bva12g01206 280 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Bva12g01206 280 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 34 275 - -
Bva12g01206 280 MobiDBLite consensus disorder prediction 193 222 - -
Bva12g01206 280 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Bva12g01206 280 MobiDBLite consensus disorder prediction 1 29 - -
Bva12g01206 280 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Bva12g01206 280 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01206 Bva-Chr12 11373358 11375332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01206 41 220 AP2-EREBP Transcription Factor Family AT4G27950 46.995 5.45e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva12g01206 AP2 5.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01206 K13434 - gmx:100800489 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01206 12 11373358 11375332 Bva12g02545 12 18954355 18956009 BWGD