LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g01200	ATGTCGTATGTGCCCCCTCACCTCAGGAACTCCAGCTCAACCACTCTAACTACCAGAGCTTCATCTCTAAACCTGGACAACAATCATCACAGCAAGCTCGCTTTCCCCTCAAACTCTCACTTCAGGAACTCTTCCCCTGCCAGTTCGCTCTCCACCTTTTCCAATGCCTCTCGACGGAGCTCCGGTGATTTTCCTTCGTCGAAGACGGTCTCTGTTCCCGACCCCATTTTCCCTCAGTGGCAACCATCCGAACGCGTTTCTCGGATGAAACCGGAGCAGATTGAAGAGATCCGTCTACGGCTTAATCTTGATGTTACTGTTGCATTGGACTCTCTTCCTGCACCTGCACCTGCACCAATAGAATCTTTTACAGATatgTGCTTGCACGCGAGTATCATGAAGGATATCGCATATCATGAATATACCAGGCCAACTTCTATCCAGGCACAAGCTATGCCAATTGCTCTTAGTGGAAGGGATCTATTGGGTTGTGCCGAAACTGGTAGTGGAAAAACTGCAGCCTTCACGATTCCTATGATACAGCATTGCTTGGCTCAACCTCCAATTCGACGTGGAGATGGTCCCCTAGCATTGGTTTTGGCTCCTACTAGAGAGCTTGCtcaacaaatagaaaaagagGTTAAAGCATTTAGTAGATCACTTGATTCATTGAAAACTGCAATAGTTGTTGGGGGAACTAACATTGGTGAGCAGAGGTCTGAGCTACGAGCAGGAGTTGACATAGTGGTTGCAACCCCTGGAAGATTTATTGATCACTTACAACAAGGCAATACGTCCCTTTCTAGAATTTCATTTGTTGTTCTAGATGAGGCTGATAGAATGCTTGATATGGGTTTTGAACCACAGATCAGAGAGgTCATGAGAAATCTTCCCGAGAAGCACCAAACATTACTATTTAGTGCAACTATGCCTGTAGAGATTGAAGCATTAGCAAAGGAGTACTTAACTAGCCCAGTGCAAGTGAAGGTGGGAAAAGTGAGTAGCCCAACAGCAAATGTTTCTCAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGATCGGCTTCTAGGTTTACTTGTAGAGGAGGCATCACAGGCTGAAAAATGCGGTCATCCATTTCCATTAACAATTGTGTTTGTCGAAAGAAAGACAAGGTGTGATGAAGTTACTGAAGCATTGGTGGCACAAGGGTTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAGAGTGAAAGGGAGGCTGCTCTGCATCATTTTCGGAATGGTTCAACTTGCATTTTGGTTGCCACTGATGTAGCATCACGGGGCTTGGACGTTACAGGAGTGTCACATGTTATAAACCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGACGTGCTGGATCCACAGGACAAGCTACTTCCTTTTACACTGATCGTGACATGTTCCTTGTGGcaaatataaagaaagcaaTAGCTGATGCTGAATCTGGGAATGCTGTGGCATTTCCAACAGGGAAGGTTGCTAGAAGGAAGGAGAAAGAAGCTGCAGCGGCACAAAAAGAGGCAAAGAATGGTTTATCCAAACACTCAGGATTTGGAGCTGCTTCTATTAACATTGAAGATAAGTACAAGTTCATGATTACTTCCTCAGACATTAAAAGAGAAGGCTTCGTTCCATTTAGAACTGCTGTCTTCACAGTTGGTCTTATTCTTTATTCCTTCGCTTGCTGCTCCTCAATTCCCCCTGCATGCCCCGTCCTGTG	1769	0.4449	MSYVPPHLRNSSSTTLTTRASSLNLDNNHHSKLAFPSNSHFRNSSPASSLSTFSNASRRSSGDFPSSKTVSVPDPIFPQWQPSERVSRMKPEQIEEIRLRLNLDVTVALDSLPAPAPAPIESFTDMCLHASIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSLKTAIVVGGTNIGEQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLTSPVQVKVGKVSSPTANVSQTLVKVSENEKIDRLLGLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVTEALVAQGLSAVSLHGGRSQSEREAALHHFRNGSTCILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVANIKKAIADAESGNAVAFPTGKVARRKEKEAAAAQKEAKNGLSKHSGFGAASINIEDKYKFMITSSDIKREGFVPFRTAVFTVGLILYSFACCSSIPPACPVL	589

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g01200	589	MobiDBLite	consensus disorder prediction	34	76	-	-
	Bva12g01200	589	Gene3D	-	79	332	IPR027417	-
	Bva12g01200	589	MobiDBLite	consensus disorder prediction	34	88	-	-
	Bva12g01200	589	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	20	531	-	-
	Bva12g01200	589	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	352	510	IPR001650	-
	Bva12g01200	589	CDD	SF2_C_DEAD	340	478	-	-
	Bva12g01200	589	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	274	282	IPR000629	-
	Bva12g01200	589	Coils	Coil	207	227	-	-
	Bva12g01200	589	Pfam	Helicase conserved C-terminal domain	371	469	IPR001650	-
	Bva12g01200	589	Pfam	DEAD/DEAH box helicase	145	315	IPR011545	GO:0003676\|GO:0005524
	Bva12g01200	589	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	152	328	IPR014001	-
	Bva12g01200	589	SMART	helicmild6	388	469	IPR001650	-
	Bva12g01200	589	SMART	ultradead3	140	343	IPR014001	-
	Bva12g01200	589	CDD	DEADc	132	329	-	-
	Bva12g01200	589	Gene3D	-	334	529	IPR027417	-
	Bva12g01200	589	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	193	488	IPR027417	-
	Bva12g01200	589	PANTHER	ATP-DEPENDENT RNA HELICASE DBP2-LIKE	20	531	-	-
	Bva12g01200	589	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	121	149	IPR014014	GO:0003724

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g01200	Bva-Chr12	11340034	11347062	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g01200	119	491	Eukaryotic Initiation Factors Gene Family	AT3G19760	35.372	9.09e-68	224

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g01200	K12823		-	gmx:100787545	899.812