Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01196 atGTGGATCAGCCATTATTGGATTGATTATTCTGGGATTTCTACGAGTTTTGGGAGCAGCGAGGAATTTGATTTTGGATTTATGGGCTCTGACATTTGTATGAATGAGAGGTGTGCGGCGGTGACCGCTATTTACGATTGGAAGAAGGGGTGGCCTCTGCGATCTGGAGGATTTGCCCAGCTGTGCAGCAGCTGCGgATCTGAATATGAGAATTCAGTTTTCTGTAATAAATTCCACCATGAAGACACGGGTTGGAGGGAGTGCAAATTTTGCAACAAGTCTATCCACTGTGGATGCATATCATCTGTGTCTTTGTTCGTGTGTCTTGATTTTGGAGGTATTTGTTGTGTTAGCTGTGAGAAGGCTTCTCAACTTCGTTTGATGCAGAATAATGAAAATCTGAATGGGCCAGTTacatcaacaaaaaataatgcaagtgATCAACATTTTGCTCAAATTGATGGTAGAATATTCATGGATAGTGTTGATGAAGGAAAGCTTATGCAATTATGCAGAATTGTTGAAGCTAGTGAATCCAACCTTTGGCCTCAAGCTCAGAGAGATGGGACAATTTCATCTCATGGTCAAACTAGCCAAGAAGTTAATTGTCCAATCAAAGAAGCAGATGCAGGATTTCCAAATGTGCTAAAACCATCTGTTCAATCATTAACATTCtctaaattagaaaataatagacCTCCATGGAAGATTAAAGATATGCATGATTCACCTGCACAGCCATCTTTGAGCATGTCTCTGGCAACCCCATCAGGAAATTCTATGCTGCCTTCTTCTAGAGAGATTGTAGAATTAAGGGATGAGGGCAAAGCATCTCCTCCCTTTAATCAAGGACAAAGGTCTCGTCCTATATTGCCTAAACCATTAAAGGGTGGGCTTACCATGAatatagaaacaaataaaggCATGATTTCTCAGTCACGCATTGCCCGGCCACCTGCTGAGGGAAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACTGATCAAGAGTTGCAGCAATTGTCTGGAGATTTAAAGTCCACAGTGGTGCCATTATTTGAGAAGGTTCTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCATGTGCGGAAGcttattttccttctatttcTCAATCAGAAGGTCTTCCTCTGCGAATTCAAGATGTGAAGGGCAATGAATGGACGTTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTCTTGGAGGGTGTAACCCCTTGTATACAATCAATGGAATTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCAGGAGGCAAAATGATGATGGGTTTCCGGAAGGCTGCGAGTTCTGTGGATACACAGGATGCCTCTACGTCTGCACTTCCTAATGGAATTTCATCAAAGGAAACAGCCTTTTCTGGTGCAACTGAGAATCTGCCCTCAGGAAGTAGTTATTCTGATCTTCTCCATTCAATGAAAGGGAGCAAGGAACCACACTTAAATGGCCCTTCTGCACCTCCGCGTTTGGAGAAGAAGAGGACTAGGAATATTGGGCCTAAAAGTAAGAGGTTGCTCATTCATAGTGACGATGCTCTGGAGTTGAGACTAACATGGGAGGAAGCACAGGACTTACTTCGTCCCCCACCTAGTGTTGAGCCAAGCATTGTCACAATTGAGGACCATGTATTTGAAGAATATGATGAACCACCTGTCTTTGGAAAAAGAACAATATTCAGTGCCCATCCATCTGGGGGACAGGAACAATGGGCCCAATGCGATAATTGCTCTAAATGGCGAAGGCTGCCAGCAGATGTTCTTCTTCCCCCAAAGTGGACATGTTCTGAAAATGCCTGGGATGATAGCAGGTCTTCGTGTTCTGGACCAGAGGAACTGAGCCCAAAGGAATTGGAAAATCTTCTGAGAACAAGCAAAGATTTTAAGAAGCGAAGAATTGCAGAAAGCAGTAAGTCACCCCAAGAACATGAGCCTTCCGGCTTAGATGCTCTTGCCAGCGCAGCAATTTTGGGAGATAGTCTTGTTGAGCCTGGTGAGTCATCAGCTGGAGCCACCACCAGACATCCTAGACACCGTCCTGGTTGCAGTTGCATTGTGTGCATTCAGCCACCTAGCGGCAAGGGAAGACATAAGCCTACGTGTACTTGTCAAGTGTGCATGACTGTAAAGCGCCGCTTCAAAACCCTTATGCTGCGTAAGAAGAAACGTCAATCTGAGCGTGAAGCCGATGCTGTTGCCCAGAAAGACCACAATGACCTCAGGGATGAAACAGAGACAAATAGCATTCCAAGAGATTATTCAAATAACTTGGAGCCAGAGGAAAACCTAGACAGAAGCCAGCCTGAGCCTGAGTTGTGGGAGCGCAGTACAGGAGAAATAGACCTGAACTGTGATCCCAGCCGTGAAGATATCAGTTTAGCAGGACCAAGCATGAGTAATCATGTGGAAATGGCAAACTACCCATTACAGGATTTTATGAATCAAAATGGCTTAAGAAACTTGAATACCGAACAGTTGGCTGCTACTCCTCGTTCTTGCTTGCTGACTCAACGTTCTGGAGAAGCTCAGAGATACTTAGCTGATGAGGGATGCTTTGCATCTGGTGCCTGGGAACAGGAAAAAAGAGATACTGAGCTATACACTAGTCACAATTCCAGTTCACTTTCTTG 2711 0.4349 MWISHYWIDYSGISTSFGSSEEFDFGFMGSDICMNERCAAVTAIYDWKKGWPLRSGGFAQLCSSCGSEYENSVFCNKFHHEDTGWRECKFCNKSIHCGCISSVSLFVCLDFGGICCVSCEKASQLRLMQNNENLNGPVTSTKNNASDQHFAQIDGRIFMDSVDEGKLMQLCRIVEASESNLWPQAQRDGTISSHGQTSQEVNCPIKEADAGFPNVLKPSVQSLTFSKLENNRPPWKIKDMHDSPAQPSLSMSLATPSGNSMLPSSREIVELRDEGKASPPFNQGQRSRPILPKPLKGGLTMNIETNKGMISQSRIARPPAEGRGKNQLLPRYWPRITDQELQQLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGLPLRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMELRAGDTVTFSRIDPGGKMMMGFRKAASSVDTQDASTSALPNGISSKETAFSGATENLPSGSSYSDLLHSMKGSKEPHLNGPSAPPRLEKKRTRNIGPKSKRLLIHSDDALELRLTWEEAQDLLRPPPSVEPSIVTIEDHVFEEYDEPPVFGKRTIFSAHPSGGQEQWAQCDNCSKWRRLPADVLLPPKWTCSENAWDDSRSSCSGPEELSPKELENLLRTSKDFKKRRIAESSKSPQEHEPSGLDALASAAILGDSLVEPGESSAGATTRHPRHRPGCSCIVCIQPPSGKGRHKPTCTCQVCMTVKRRFKTLMLRKKKRQSEREADAVAQKDHNDLRDETETNSIPRDYSNNLEPEENLDRSQPEPELWERSTGEIDLNCDPSREDISLAGPSMSNHVEMANYPLQDFMNQNGLRNLNTEQLAATPRSCLLTQRSGEAQRYLADEGCFASGAWEQEKRDTELYTSHNSSSLS 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01196 903 CDD B3_DNA 354 455 IPR003340 GO:0003677
Bva12g01196 903 ProSiteProfiles Zinc finger CW-type profile. 592 642 IPR011124 GO:0008270
Bva12g01196 903 SMART B3_2 356 456 IPR003340 GO:0003677
Bva12g01196 903 MobiDBLite consensus disorder prediction 784 813 - -
Bva12g01196 903 SUPERFAMILY DNA-binding pseudobarrel domain 354 458 IPR015300 -
Bva12g01196 903 MobiDBLite consensus disorder prediction 480 530 - -
Bva12g01196 903 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 30 854 - -
Bva12g01196 903 Pfam B3 DNA binding domain 356 455 IPR003340 GO:0003677
Bva12g01196 903 MobiDBLite consensus disorder prediction 745 822 - -
Bva12g01196 903 MobiDBLite consensus disorder prediction 748 775 - -
Bva12g01196 903 Pfam CW-type Zinc Finger 597 639 IPR011124 GO:0008270
Bva12g01196 903 Gene3D - 595 650 - -
Bva12g01196 903 MobiDBLite consensus disorder prediction 277 296 - -
Bva12g01196 903 MobiDBLite consensus disorder prediction 480 499 - -
Bva12g01196 903 Gene3D - 334 461 IPR015300 -
Bva12g01196 903 ProSiteProfiles B3 DNA-binding domain profile. 356 457 IPR003340 GO:0003677
Bva12g01196 903 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 30 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01196 Bva-Chr12 11314680 11321658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01196 28 818 B3 DNA Binding Superfamily AT2G30470 51.485 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva12g01196 B3 6.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01196 - - gmx:100789848 1207.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01196 12 11314680 11321658 Bva12g02552 12 19011308 19019092 BWGD