Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01195 ATGGATCCTGGTCGCTATGGTCTACATCAAGGCTGGGATAATAACAGCGCTCTGGAGGGTTATGGTGCGGTACATGAGCCAAATTTCCGGGTTGGTGGTTCATATGATGAAAGAAGGTTTATAGATGAGAGGTATCCAAGGGATAGTATCTACGAGAGGAATGCCTTGCCCCGTGATGTTTTGGAGCGGGAGTCCTATCCTCCACCACCAGGGCCTGCAGTTGGCCATTGGGGTCAATCCAAAAGGAGAGGTTATGATGAAGATTATCCACTGGACCGAGATTCTAGACGCCTTCAGAAGCCTTATTATGATTCATATCATCAGATTGATGCTTTTAGAGATCGTAATGTTGACACATATGCGgaatttgataagtttaatgATGGCTATGCTGGAATGGACAACTACGGGGATCGAGGATATGATAAACCTGCTAGGTTTGGGGGACATGACCGTGATGCATATGATGATTATGGCTACAGGTCACGTGTTTCCCATCATTGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGGAGAGATAGTAATTGGAGGCGGCATGAATCCCATGATAGAGACCATGATAAAAGATGTCTTAGTCGGGAAAAAGATCTGAATCCACATAGGAGACACGAGCGATCCTATTCTCGGTCACGTTCTCGGTCACGTTCCCGATCCCACTCCCATTCCCATTCTCGGTCTCGTTCCCAATCTCATGGTTACGATGATCGTCCAAGATCAAGGTCCCCTCGAGGTCGAAGCCGTGGCAGAAGTTATCGAGAAGACAGTTATGCTGACAGTCGATATGAGAGAAGTGAAAAACGCAGGGATCGAGAGGAGAAACGTCAGCGTGAGCATTATTATGTGGCTCCATCTGCCACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATTTATACCAGATACTTGCTGAATGGGGACCCCTTCGTCATGTTCGTgttataaaagagagaaattctGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACAAACAATGATGGACAAGCTTGGAGATGATGGTCTTGTTATTGATGGCAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGCCCAGGTGGTCCTTTTGGTCAGGAGGGATCTATGAGATCGGGCCATAATCATAAAAACATCACAATACCATCTGATTGGATGTGCACCATATGTGGCTACATCAATTTTGCACGGAGGACGTCCTGCTACCAGTGTAATGAGCCACGAACTGAGGATGCTCCTGCAGCAGATATCACTTTATCAAATCCGACAGCCTCAGGAAAGAAAGGATTGGAAGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTGCGGTATGAGTTTTCCAAGCATGCTCCAATAAAGGATCTGCGTCTTGTGAGGGACAAATTTACTCATGTCTCAAGGGGTTTTGCATTTGTGCATTTTTATTCGGTGGAGGATGCTACTAGAGCTCTTGAAGCAACAAATGGAACAGCCCTTGAGAAGAATGGGCAGATTCTGAGAGTAGCATATGCCAAAAGTATCCTGGGTCCTGGATCAGGATCATTGGGACCTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCCACATTTGCTCAACAGTATGATGCTGTTGGATGGGCTCCACGAGAATACAATCCTGATGACAAACAATCTACCGAGCAAGTGCAAGCTGGCACAGAAACTGCTGTTCAGAAGGATGGCCTGGCTCCACAATCAGGCTTTGTTTGGGATCAAGCATCTGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGGAATACTGGTCTTTATTATGATGGTAACAAAGGGATTTGGTATTCTTATGACCATCAAACACAGCAATACATCCCTTGTTCTGATCAAACTGAGAGTAAAATGCCTGATAACCAATCTGAAACTTCAAAGGCATCTGATGGTTCCAGCAGTAAAAAAGTGGTGATTTCTGCACCAGCTACAACTGTTTCGTCAGTTGAGAAGCCAACTTCACTGCCAGATGCAGTCCAGGCTGCTGCAACAGCTGCCATAGctgcagaaaagaaagaaaaagaaaaatcaaaggagATAAAGCTTGCATCAAAAAGCAGTATTCTGgctaacaagaagaaaatgaataatgtATTGACAATGTGGAAACAGAGGAGTCATGAGGGGCAGGCTACTCGTGTGGCTTTGGAGGACAATCAGCCATCCTTTTCAGCAGATGATAGGTCCTATTTGTCTGGTAATTCCACAACGAGTAAGTTCAGAACTGAGACTTCAGCTGCATCGGAGAATAATGCAGGCAATCCGGGGATCCCCGCTGTATCAGCTGCCCAAACTACTGCTTTTGATTCTCAGGTCCAGCCTCGGCCTATGAGTAACAGTCTTGGGGGTACGTTGAGGGGGGTCATTAGAGGTTCTGGAAGAGGGGTTGTTAAAGCAGATGTTCCTTATTCAGGATCTTCAGCTGCAGCTACTGGTACTTCGAGTTTGCCTACAACAAATTTAGATGCACTGGGTGGTGCAACTCCCTTTAGGACAGATGCCTCTGCCCTTGGTTCATATACACCACCTGTGGCTAGTGGAAGTGGCAAAAGAAGGTTTTCGGAAATGCCACATTCTGCTTCAAATCAGAAAGAACAACCTCAAAATACCTACAGGGATCGTGCAGCTGAGAGGAGAAATTTGTATGGCTCGTCATCTTCTGTTGGGGATGATTTGGCTGACCTTTCACCTGGGGATTCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCTTTCCCTCCTGGGGTTGGTGGAGGACGTGTGGTTGGAGATGCCAATCTCGATACTTTTGAGGTGATTACGGCAGATAAAGCAATTGATGAGAACAACGTTGGCAATCGGATGCTTCGAAACATGGGATGGCATGAAGGCTTGGGATTAGGAAAGGATGGAAGTGGAATGATAGAGCCCGTCCAAGCGCAAGCCATGGATAGTAGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTGGATCGTAGCCTTGAGGTGCAGGCAGGGGATAGTTACAGGACGCTCGTTCATAAGAAAGCACTTGCCAGGTTTCGGGAAATGTCTCAGGGTTA 3227 0.449 MDPGRYGLHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFIDERYPRDSIYERNALPRDVLERESYPPPPGPAVGHWGQSKRRGYDEDYPLDRDSRRLQKPYYDSYHQIDAFRDRNVDTYAEFDKFNDGYAGMDNYGDRGYDKPARFGGHDRDAYDDYGYRSRVSHHCREDSHERDYDHGRHSYDSDYERGRRDSNWRRHESHDRDHDKRCLSREKDLNPHRRHERSYSRSRSRSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGRSRGRSYREDSYADSRYERSEKRRDREEKRQREHYYVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQTMMDKLGDDGLVIDGRKLFFEYSSKPTGGPGGPFGQEGSMRSGHNHKNITIPSDWMCTICGYINFARRTSCYQCNEPRTEDAPAADITLSNPTASGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATRALEATNGTALEKNGQILRVAYAKSILGPGSGSLGPSQSSSLAAAAIEAATFAQQYDAVGWAPREYNPDDKQSTEQVQAGTETAVQKDGLAPQSGFVWDQASGYYYDAASGFYYDGNTGLYYDGNKGIWYSYDHQTQQYIPCSDQTESKMPDNQSETSKASDGSSSKKVVISAPATTVSSVEKPTSLPDAVQAAATAAIAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSFSADDRSYLSGNSTTSKFRTETSAASENNAGNPGIPAVSAAQTTAFDSQVQPRPMSNSLGGTLRGVIRGSGRGVVKADVPYSGSSAAATGTSSLPTTNLDALGGATPFRTDASALGSYTPPVASGSGKRRFSEMPHSASNQKEQPQNTYRDRAAERRNLYGSSSSVGDDLADLSPGDSNRDFASRKGDPMPFPPGVGGGRVVGDANLDTFEVITADKAIDENNVGNRMLRNMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKLDRSLEVQAGDSYRTLVHKKALARFREMSQG 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01195 1075 MobiDBLite consensus disorder prediction 129 298 - -
Bva12g01195 1075 PANTHER RNA-BINDING PROTEIN 220 1072 - -
Bva12g01195 1075 PANTHER RNA-BINDING PROTEIN 38 208 - -
Bva12g01195 1075 MobiDBLite consensus disorder prediction 56 99 - -
Bva12g01195 1075 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 534 IPR000504 GO:0003723
Bva12g01195 1075 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 377 IPR000504 GO:0003723
Bva12g01195 1075 Gene3D - 448 567 IPR012677 -
Bva12g01195 1075 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 547 IPR000504 GO:0003723
Bva12g01195 1075 SMART zf_4 414 438 IPR001876 -
Bva12g01195 1075 MobiDBLite consensus disorder prediction 80 99 - -
Bva12g01195 1075 SUPERFAMILY RNA-binding domain, RBD 302 405 IPR035979 GO:0003676
Bva12g01195 1075 MobiDBLite consensus disorder prediction 225 247 - -
Bva12g01195 1075 CDD RRM1_RRM2_RBM5_like 304 384 - -
Bva12g01195 1075 SMART rrm1_1 307 382 IPR000504 GO:0003723
Bva12g01195 1075 SMART rrm1_1 468 543 IPR000504 GO:0003723
Bva12g01195 1075 MobiDBLite consensus disorder prediction 885 970 - -
Bva12g01195 1075 ProSiteProfiles G-patch domain profile. 997 1043 IPR000467 GO:0003676
Bva12g01195 1075 ProSitePatterns Zinc finger RanBP2-type signature. 416 435 IPR001876 -
Bva12g01195 1075 MobiDBLite consensus disorder prediction 909 923 - -
Bva12g01195 1075 MobiDBLite consensus disorder prediction 770 834 - -
Bva12g01195 1075 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 386 IPR000504 GO:0003723
Bva12g01195 1075 MobiDBLite consensus disorder prediction 666 691 - -
Bva12g01195 1075 MobiDBLite consensus disorder prediction 248 298 - -
Bva12g01195 1075 CDD OCRE_SUA_like 613 664 IPR035623 -
Bva12g01195 1075 Pfam OCRE domain 615 665 IPR041591 -
Bva12g01195 1075 Gene3D - 270 409 IPR012677 -
Bva12g01195 1075 Pfam G-patch domain 998 1039 IPR000467 GO:0003676
Bva12g01195 1075 CDD RRM1_RRM2_RBM5_like 465 545 - -
Bva12g01195 1075 ProSiteProfiles Zinc finger RanBP2 type profile. 412 441 IPR001876 -
Bva12g01195 1075 SMART G-patch_5 995 1041 IPR000467 GO:0003676
Bva12g01195 1075 MobiDBLite consensus disorder prediction 139 224 - -
Bva12g01195 1075 PANTHER FI21118P1 220 1072 - -
Bva12g01195 1075 PANTHER FI21118P1 38 208 - -
Bva12g01195 1075 SUPERFAMILY RNA-binding domain, RBD 465 548 IPR035979 GO:0003676
Bva12g01195 1075 SUPERFAMILY Ran binding protein zinc finger-like 408 442 IPR036443 -
Bva12g01195 1075 Gene3D - 410 442 - -
Bva12g01195 1075 MobiDBLite consensus disorder prediction 770 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01195 Bva-Chr12 11306475 11313408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01195 305 531 Eukaryotic Initiation Factors Gene Family AT2G36660 25.197 1.46e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01195 K13094 - gmx:100777686 1541.94