Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01187 ATGGGTCGTATTCCATGCTGTGAGAAGGAGAATGTGAAAAGGGGGCAGTGGACACCTGAAGAAGACAACAAGCTCTCATCCTACATTGCTCAACACGGCACCCGTAACTGGCGTCTCATCCCCAAGAATGCTGGCCTTCAGAGATGTGGTAAGAGCTGCAGGCTCAGGTGGACTAATTACCTTCGTCCTGACCTTAAACATGGCCAGTTCTCAGATGCAGAAGAGCAAACCATTGTCAAGCTTCATTCTGTTTTTGGTAACAGATGGTCACTGATAGCAGCTCAGCTTCCAGGGCGCACTGACAATGATGTAAAAAATCACTGGAACACCAAGCTCAGAAAGAAACTTTCAGGCATGGGCATCGACCCTGTCACCCACAAGCCATTGTCCCATCTAATGGCTGAAATTGCAACAACATTGGCACCAGCTCAGGCAGCACATCTCGCCGAAGCAGCCCTTGGCTGCTTCAAAGACGAGGTTCTCCACCTTCTCACAAAGAAGCCCACGACCTTCCAAGTCCAACATTCCATTCCTGCAATGGAGAACAACAATATCACTGCTTACATCAACTGCAAACCGGAAGAAAAGGATGAAAACGCCATTGAAAAGATCAAGCTTGGCCTGTCAAAGGCTATGCAAGAATCTGAAATGATACCTTCAAGTAAATCTTGGGACCCCGTTGGAATTACGTCTACTAGTTTTGCAGGGAGCTGCAGTGTTTTCCCTACGACGCCGTCTGGGTTTCAATTTAGTCCAACAGATTTCGGCAATGAAGGAGATGATAGATCAGTGTGGAGCCAGAGTGTGTGTACTGGAAGCACGTGCACAGGCATGGTGGATCAGCAAGGCCAGTTAGGTGGAAAGCTTGAGgatgaaaatggagaagatGATTCTGAGGGTGGAAAAGAAATCAGAAATGGAACCAGCAGCATATTCAACTCAGACTGTGTCTTGTGGGATTTGCCATCACATGATCTGATTAACCCCATGGAATA 995 0.4673 MGRIPCCEKENVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLRKKLSGMGIDPVTHKPLSHLMAEIATTLAPAQAAHLAEAALGCFKDEVLHLLTKKPTTFQVQHSIPAMENNNITAYINCKPEEKDENAIEKIKLGLSKAMQESEMIPSSKSWDPVGITSTSFAGSCSVFPTTPSGFQFSPTDFGNEGDDRSVWSQSVCTGSTCTGMVDQQGQLGGKLEDENGEDDSEGGKEIRNGTSSIFNSDCVLWDLPSHDLINPME 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01187 331 Gene3D - 68 130 - -
Bva12g01187 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva12g01187 331 CDD SANT 17 61 IPR001005 -
Bva12g01187 331 CDD SANT 70 112 IPR001005 -
Bva12g01187 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva12g01187 331 SMART sant 13 63 IPR001005 -
Bva12g01187 331 SMART sant 66 114 IPR001005 -
Bva12g01187 331 PANTHER F14D16.11-RELATED 1 330 - -
Bva12g01187 331 Gene3D - 14 66 - -
Bva12g01187 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva12g01187 331 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Bva12g01187 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva12g01187 331 PANTHER TRANSCRIPTION FACTOR MYB80 1 330 - -
Bva12g01187 331 MobiDBLite consensus disorder prediction 284 308 - -
Bva12g01187 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Bva12g01187 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01187 Bva-Chr12 11269377 11272244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01187 1 167 MYB Transcription Factor Family AT5G56110 91.018 6.02e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g01187 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01187 K09422 - qsu:111994049 498.819