Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01178 ATGAAGATCAATGTGATGACTACGGATGAACAAATCATTAAGTTGGATGTGGATCCCAACGAATCTGTGGAAAACGTGAAAGCATTGCTTGAGGTAGAGACGAGAGTGCCTATTCTGCAACAGCAACTTCTGTATTATGGCAAGGAGATGGGGAATTCTCAGAAATTAAGTGAGCTTGGTGTTAACGATGAAGATTTGGTGACGATGGTCTCTAATGCTGCTTCTAGGAATGATTTGGGCATAAATCCTGATGGATCTGCTGTCAACCCTGGGGCTTTCCAGCAGCACTTCAGAAATGATGCTAACTTGATGGGTCAGCTTTTTCAGACTGATCCAGAGTTGGCACAAGCTGTTATAGGGAATGATCTCAATAGACTACAGGACATTTTACGATTACGTCATCAGCAAGGATCTGAAATGCGGCGTAAAAGAGATGAGGAGCTTGCTCTTCTATATGCGGATCCTTTTGATGTTGAAGCGCAAAGGAAGATTGAAGCTGCCATCCGCCAGCAAGGAATTGATGAAAACTGGGCAGCTGCACTAGAACATAACCCTGAAGCTTTTGCAAGGGTGgtCATGTTGTATGTTGACATGGAAGTTAATGGTGTTCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACCATCATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGACTACTAGACCAGCGTTACAAAGGAATTGCTCATGGAGTTGGCCAATCAGAGATTTTGGGTCGTATACATGTAGCTTCAATCAAGATTGGGAATATATTTTACCCTTGCTCATTCTTAGTGTTAGATTCACCCAATATGGAGTTCCTCTTTGGGCTGGATATGCTCAGGAAGCACCAGTGCATTAtagatttaaaagaaaatgttttgagAGTTGGTGGAGGAGAGGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCTTCTCGGTTTCTAGGTGACGAAAGGTATTCTGAGCAACCTTCCAGCTCAGGAGCTCCTGTGACGTCAGGAACAACAATCAAGAGCGATAATGCACCACAAGGAGGCCAGTCTTCAGGAGGTGCCGGTGGTGGCAAGGGTCAGGATTCTGATTTTGAAGCCAAAGTTGCAAAGCTTGTTGAGCTAGGGTTTGGAAGAGAAGCAGTTATACAAGCTCTCAAGTTATTCAATGGCAATGAGGAACAGGCTGCTGGATTTCTTTTTGGGGGCTG 1220 0.4361 MKINVMTTDEQIIKLDVDPNESVENVKALLEVETRVPILQQQLLYYGKEMGNSQKLSELGVNDEDLVTMVSNAASRNDLGINPDGSAVNPGAFQQHFRNDANLMGQLFQTDPELAQAVIGNDLNRLQDILRLRHQQGSEMRRKRDEELALLYADPFDVEAQRKIEAAIRQQGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVASIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLGDERYSEQPSSSGAPVTSGTTIKSDNAPQGGQSSGGAGGGKGQDSDFEAKVAKLVELGFGREAVIQALKLFNGNEEQAAGFLFGG 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01178 406 Pfam UBA/TS-N domain 369 402 IPR015940 -
Bva12g01178 406 MobiDBLite consensus disorder prediction 323 365 - -
Bva12g01178 406 Gene3D Acid Proteases 172 318 IPR021109 -
Bva12g01178 406 SMART uba_6 368 405 IPR015940 -
Bva12g01178 406 MobiDBLite consensus disorder prediction 325 360 - -
Bva12g01178 406 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 365 406 IPR015940 -
Bva12g01178 406 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 404 - -
Bva12g01178 406 PANTHER AT13091P 1 404 - -
Bva12g01178 406 SUPERFAMILY Acid proteases 179 294 IPR021109 -
Bva12g01178 406 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
Bva12g01178 406 Gene3D - 369 404 - -
Bva12g01178 406 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Bva12g01178 406 Pfam Aspartyl protease 170 293 IPR019103 GO:0004190|GO:0006508
Bva12g01178 406 SMART ubq_7 1 72 IPR000626 GO:0005515
Bva12g01178 406 CDD UBA_scDdi1_like 369 404 - -
Bva12g01178 406 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Bva12g01178 406 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Bva12g01178 406 SUPERFAMILY UBA-like 365 406 IPR009060 GO:0005515
Bva12g01178 406 CDD RP_DDI 178 301 IPR019103 GO:0004190|GO:0006508
Bva12g01178 406 Gene3D - 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01178 Bva-Chr12 11221946 11227961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01178 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 7.32e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01178 K11885 - pop:7457658 653.284