Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01161 ATgCCAGAGTCGTTGTCTAATTCAAGCACCATGGCTTCATTTACTTCAAATTCTGCAGCAGGAGAAGATAGAATGGCAAGTGCCCGGAACAGGTCTCCTCGTGCTTCTTCTTCACCGCCTTCTTTTTTGACTCGGATGGCCATGAGAATATCCAGAGCAAGATGGTTCATTTTCTTAAGAAGAGTGTTCCATTACCAAAATGGCTCGAGGTCTGATCTTGGGTCCAATCCTTTCAATTCTAGCACTTGGATGACACTGGAGTTCATTGCTTTGATGGTTCAGATAACTATTACAACATTCACTTTGGCCATTTCAAAGAGGGAGAGGCCTATTTGGCCCATGAGGCTATGGATTTCTGGTTACGATATTGGTTGTGTCCTTAATCTATTGCTGCTTTATGGGCGCTACCGGCAACTTCGTCTGACTCAAGGAGATTCTCTCAGCCTTTCTGATATGGAACAGCAGAGAGGCAATGAAGAAACAAGGAGCTCACCTTTGATGAATAGATGCAGAACTTCACTTGAGCTTTTCTTCGCCATATGGTTTGTGATGGGTAATGTTTGGGTTTTCGACTCTCGTTTTGGATCTTTCCATAGAGCTCCAAAACTTCATGTGCTTTGCATCTCCCTTCTTGCTTGGAATGCAATCTGCTACTCATTTCCCTTCCTACTGTTCCTGCTGCTATGCTGCTGTGTGCCACTTATAAGCAACGCCCTTGGGTACAACATGAACATGGGCTCCTCTGAAAAAGGAGCATCTGAAGATCAAATTTCCCAACTACCCAGTTGGAGATACAAACAACTTCATAGCAAGATAGAGCATGGCAATGATTCTGAAAGCAGTAAAGGGCTTATCAATGAAGATCCAGAATGCTGTATTTGCTTAGCCAAGTATAAAGACAAAGAAGAAGTTAGACAATTGCCTTGTTCCCATATGTTTCACCTCAACAAATTAATTATCACTGCCGATCGAGTACTTTCTTCTGCATGCCTTCTCACACAGCATCAAAATTTTAGTGAAGAAATTATGGATGAACACGTTGAGCAAAAGCCCCCAAAGACGAGGCAACTGGGTGGTCACAACTTGAAACTTTCTGATTTTGATTTGGAGGATTTCAAGAGGAACGCACATTTAGTTTCACCAACAACTCATCAATATGATCAAACTCTCAGCAGGAAATCTGGGGCGGGAAGATCCAACTGTCTCTGCTCACCAACCACTCATGCCGGCTCTTTCCGGTGCCGGCACCACCGTGCTTCCGGGGGAATGACCCGTGGAGGATCCGTTGGATCCAATCTCTCCGCATTAGGATCCAAAAATGGCCACATCAGTGACTCCCTTTCAGCTCAGTA 1352 0.443 MPESLSNSSTMASFTSNSAAGEDRMASARNRSPRASSSPPSFLTRMAMRISRARWFIFLRRVFHYQNGSRSDLGSNPFNSSTWMTLEFIALMVQITITTFTLAISKRERPIWPMRLWISGYDIGCVLNLLLLYGRYRQLRLTQGDSLSLSDMEQQRGNEETRSSPLMNRCRTSLELFFAIWFVMGNVWVFDSRFGSFHRAPKLHVLCISLLAWNAICYSFPFLLFLLLCCCVPLISNALGYNMNMGSSEKGASEDQISQLPSWRYKQLHSKIEHGNDSESSKGLINEDPECCICLAKYKDKEEVRQLPCSHMFHLNKLIITADRVLSSACLLTQHQNFSEEIMDEHVEQKPPKTRQLGGHNLKLSDFDLEDFKRNAHLVSPTTHQYDQTLSRKSGAGRSNCLCSPTTHAGSFRCRHHRASGGMTRGGSVGSNLSALGSKNGHISDSLSAQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01161 450 MobiDBLite consensus disorder prediction 1 40 - -
Bva12g01161 450 MobiDBLite consensus disorder prediction 425 450 - -
Bva12g01161 450 Pfam RING-like zinc finger 290 315 IPR001841 -
Bva12g01161 450 SUPERFAMILY RING/U-box 282 315 - -
Bva12g01161 450 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 16 331 - -
Bva12g01161 450 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 331 - -
Bva12g01161 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 337 IPR013083 -
Bva12g01161 450 MobiDBLite consensus disorder prediction 1 23 - -
Bva12g01161 450 MobiDBLite consensus disorder prediction 420 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01161 Bva-Chr12 11133505 11137753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01161 42 334 C3H Transcription Factor Family AT4G26580 69.492 1.42e-138 399