Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01129 ATGGCAGACTCAGACAACGATTCCGGCGGAGCACAGCACACTGGGAACAATTCTCACGGCAGCGAATCGTCGCCGCGAGAGCAAGACCGGTTTTTGCCTATAGCGAACGTGAGCAGGATCATGAAGAAGGCTCTGCCGGCAAACGCGAAGATCTCAAAGGACGCAAAAGAGACAGTGCAGGAGTGCGTTTCCGAGTTCATCAGCTTTATCACAGGCGAGGCCTCCGACAAGTGCCAGAGGGAGAAGCGCAAGACCATCAATGGCGACGATTTGCTCTGGGCTATGACCACCTTAGGATTCGAGGACTACGTGGAGCCATTGAAGATTTATTTACAAAGGTTTAGGGAAATTGAGGGCGAGAAGAGCGTGGCGGCGCGTGACAGGGAAGGGGGAGTTGCTGGTGGCGGTGGTGTAGCTGCAGGGAATAGCGGGTACGAGGGTGGTGGAGTATATGGGGGAGGAGGTGGAGTTGGAATGGGGATGATGATGCATCAGGGACACGTGTACGGTTCAACTGGGTTTCATCAGATGGCTGTGAGTGGTGGTAGTGGCGGTCCTGTTATGGGTAAGAGTGGGCCAAGTTATCCGGGTCCTGGATCTAATGCGGGTAGGCCCAGATG 620 0.55 MADSDNDSGGAQHTGNNSHGSESSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREIEGEKSVAARDREGGVAGGGGVAAGNSGYEGGGVYGGGGGVGMGMMMHQGHVYGSTGFHQMAVSGGSGGPVMGKSGPSYPGPGSNAGRPR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01129 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Bva12g01129 206 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bva12g01129 206 MobiDBLite consensus disorder prediction 180 206 - -
Bva12g01129 206 Gene3D Histone, subunit A 18 133 IPR009072 GO:0046982
Bva12g01129 206 MobiDBLite consensus disorder prediction 1 22 - -
Bva12g01129 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 168 - -
Bva12g01129 206 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Bva12g01129 206 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Bva12g01129 206 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Bva12g01129 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bva12g01129 206 SUPERFAMILY Histone-fold 28 128 IPR009072 GO:0046982
Bva12g01129 206 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01129 Bva-Chr12 10985916 10986536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01129 1 160 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.625 1.35e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva12g01129 CBFD_NFYB_HMF 2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01129 K08065 - gmx:100813580 278.87