Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01124 ATGGCCAGCAATGGTGCAAAGGAGCCCTCGCTGCCACGACCACTGGATTCTGAagctcaaaatattaaaaggcaGCTAAACAAAAGAAGGTATCTTCGCTGTAGAAGTGCTCCTCTTGCAGGCCTTGCTGCTCCAGAGAAAAATGGCATTGACTCAAATCCACGTTCTGAATCCATTTTGGGCAAATTACATCCAAGTTTAAGACAAGTTGCTATATGCCTTGCAGCATATTTAGGCGTAGGAGCTGTAGTCTTCTATCTTGTTAGGCACCAGCTCAAagggaagaaaacaaatggaTTTCTTGATGCTGTATACTTTACAATTGTGACAATGACCACTTTAGGATATGGAGACCTTGTGCCCAACAGTGTCCTTACAAAACTCCTCGCCTGTGCTTTCGTCTTCACAGGAATGGCAATGGTTGCACTAATCCTAAGCAAAGCAGCAGACTACTTGGTTGAAAAGCAggaaatttttctaattaaagcTCTTAACCGCAAAAAACTTGGTGAAACTGATGTTTTGAGGAAGGTTCAGGTCAACAGAACAAGATACAAACTTGTGCTGGTTTTGTTCCTTCTTTTGATATTCATTGTAGTAGGGACAACAGTTTTAGCCACTGTTGAGAAATTAAGTCTTGTTGATGCCTTCTATTGCGTTTGTTCTACTTTAACAACACTGGGTTATGGCGACAAGAGTTTCTCAACCAAAGCAGGAAGAGTTTTTGCTGTGTTTTGGATATGGACAGGCACCATTTGCTTGGGTCAGCTATTCCTCTATGTTGCTGAGCTAAAAACTGAGAGCAGACAGAAGGAACTTGTCAACTGGGTTCTTAATAAGAAGATGACCCATCTGGATTTGGAGGCAGCAGATCTTGATGGTGATGGAACTGTGGGGGCTGCTGAATTTGTTATCTATAAGCTGAAAGAAATGGGGAAAGTTACTCAGAATGATATTTCACTTATATTGAAGGAGTTTGAAGAGCTTGATGTTGATCAATCTGGTACCCTATCATTTGCTGATATAGCACTTGCTCAGGGAATTTA 1046 0.3958 MASNGAKEPSLPRPLDSEAQNIKRQLNKRRYLRCRSAPLAGLAAPEKNGIDSNPRSESILGKLHPSLRQVAICLAAYLGVGAVVFYLVRHQLKGKKTNGFLDAVYFTIVTMTTLGYGDLVPNSVLTKLLACAFVFTGMAMVALILSKAADYLVEKQEIFLIKALNRKKLGETDVLRKVQVNRTRYKLVLVLFLLLIFIVVGTTVLATVEKLSLVDAFYCVCSTLTTLGYGDKSFSTKAGRVFAVFWIWTGTICLGQLFLYVAELKTESRQKELVNWVLNKKMTHLDLEAADLDGDGTVGAAEFVIYKLKEMGKVTQNDISLILKEFEELDVDQSGTLSFADIALAQGI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01124 348 SUPERFAMILY Voltage-gated potassium channels 178 282 - -
Bva12g01124 348 Pfam Ion channel 72 153 IPR013099 -
Bva12g01124 348 Pfam Ion channel 194 263 IPR013099 -
Bva12g01124 348 SUPERFAMILY EF-hand 283 343 IPR011992 -
Bva12g01124 348 Gene3D - 278 346 - -
Bva12g01124 348 Gene3D - 64 158 - -
Bva12g01124 348 ProSitePatterns EF-hand calcium-binding domain. 291 303 IPR018247 -
Bva12g01124 348 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 19 340 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bva12g01124 348 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Bva12g01124 348 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bva12g01124 348 PRINTS Two pore domain K+ channel signature 225 234 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bva12g01124 348 SUPERFAMILY Voltage-gated potassium channels 66 159 - -
Bva12g01124 348 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 19 340 - -
Bva12g01124 348 Gene3D - 169 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01124 Bva-Chr12 10963528 10965950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01124 1 346 Ion Channels AT5G55630 53.073 4.28e-129 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01124 K05389 - gmx:100800137 464.151