Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01116 ATGCAAGCTGTGGCACTGAGGGTAGACAGTGACAGAGCTGTGTTCTACAGAGTTACAATTCTTGGGACACAGGACACTCTCTTAGATAGCACGGGAACACATTACTTTTACAAATGTAACATCCAAGGAAATGTTGATTTCATCTTTGGCAATGCAAAATCACTGTACGAGGACTGCCACATCCGATCAACAGCCAAGAGCTATGGAGCAATTGCAGCTCACCACAGGAACTCACCAAACGAAGACACAGGGTTTTCTTTCCTAGGTTGTGAAATCCAAGGAACTGGTACTAATGTCCTGCTGGGAAGAGCTTGGGGGGATTATGCAAGAATAGTCTACTCATTCTGTTACATGGATAGCATTATTGCTAGTGAAGGATGGAGTGAATGGGAGCAACCATCTAGAAAGAAGACGGCGGTGTTCGGAGAATACCAGTGCCGGGGAAGAGGAGCAGATAGAAGTGGTAGGGTGCCATGGTCAAGATCATTTCATTATGAGGAGGCGAGGCCATTCATAAGCGAAAGTTTCATAAATGGAGACCAATGGCTTAGACTATA 557 0.4524 MQAVALRVDSDRAVFYRVTILGTQDTLLDSTGTHYFYKCNIQGNVDFIFGNAKSLYEDCHIRSTAKSYGAIAAHHRNSPNEDTGFSFLGCEIQGTGTNVLLGRAWGDYARIVYSFCYMDSIIASEGWSEWEQPSRKKYSIL 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01116 141 PANTHER PECTINESTERASE QRT1 1 137 - -
Bva12g01116 141 Gene3D - 1 140 IPR012334 -
Bva12g01116 141 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 137 - -
Bva12g01116 141 Pfam Pectinesterase 2 132 IPR000070 GO:0030599|GO:0042545
Bva12g01116 141 SUPERFAMILY Pectin lyase-like 2 132 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01116 Bva-Chr12 10932855 10933648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01116 2 137 Carbohydrate Esterase AT5G55590 66.912 3.35e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01116 K01051 - lja:Lj2g3v3281260.1 223.787