Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01100 ATGGAATCTGATCTTGGCAAGCTCTTCATTGGAGGAATTTCCTGGGATACTGATGAGGAGCGTCTCAAAGAATATTTTGGGAAGTATGGTGAGGTGATAGAGGCCGTGATCATGAGAGATCGCACAACAGGTCGTGCTcgtggttttggttttgttgtcTTTGCTGACCCTGCTGTTGCTGAAAGAGTCATTATGGATAAGCACGTAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCCGTTCCTAGGGATGATCAGCATACTATTAATCGACAATCTGGTAGTGTCCATGGTTCTCCTGGTCCTGGACGCACAAAAAAGATTTTCGTTGGAGGTTTACCTTCAACTATTACTGAAAGCGACTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGCTTCATCACCTATGATTCAGAAGAAGCAGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGAGCAGTTCCCAAAGAGCTTTCTCCTGGGCTGAACCGTAGCCCGTTGATAGGATATAACTATGGTTTGGGTAGGGGCAATAGCTACCTAAACAGTTATGCTCAGGGTTTTAATATGAGTCCAGTTGGAGGTTATGGAGTCAGGATGGATGGTAGGTTTAGTCCAGTTACTAGTGGTAGAAGTGGGTTTTCCCCATTTGGCACAACCGCTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGTCCAAGCTATGGTGGGACTTCCAATTATGGGAGTAATCTAGGATATGGTCGGATATTTAGTCCTTTCTATAGTGGCAACTCAAGCAGGTATACTACTCCCATTGGTTACAGTGGGGGTAGTGGTAGAGGCGATTCTCTCATGAACTCAACTTCTCGAAATCTCTGGGGAAATGGGGCCCTGAATAATGCTAATAACCCAGTCAGCCCAGGTGCTTATTTGGGATCTGGAGGTGGGGCTTTTGGCATTACACTTGGAAATAGTGGCACAAACTGGGGTCAGTCCCTTCCAAACCAGGGTGGAGGGAATGCTTCTGGCTACGCTACTGGGAATAGTGTTTATGGAGGTGGAGATAGCAGCTTTGGGTTAGGAGGAGCCGGCTATGGAAGAACTAGTAGTACTGGTGTAACTTCGTCCACTTCATTTTCTGCGTCAACAGGTGGTTTTGAAGGGTCCTATGGGGACTTATACCGCAGTGGTTCAGTTTATGGTGACTCAACCTGGCGATCTGGTGCTTCTGACCTAGATGGTTCAGGCTCATTTGGCTATGGACTTGGTGGTATAGTTTCTGATGACCCAGTAAAGAGTTCTGAGGGTTATGTTGGAAACTACAGTGTTACAAATAGACAATCTAATAGAGGAATTGCTGCCTA 1433 0.4424 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHVIDGRTVEAKKAVPRDDQHTINRQSGSVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGLNRSPLIGYNYGLGRGNSYLNSYAQGFNMSPVGGYGVRMDGRFSPVTSGRSGFSPFGTTAYGMGVNLDSGLSPSYGGTSNYGSNLGYGRIFSPFYSGNSSRYTTPIGYSGGSGRGDSLMNSTSRNLWGNGALNNANNPVSPGAYLGSGGGAFGITLGNSGTNWGQSLPNQGGGNASGYATGNSVYGGGDSSFGLGGAGYGRTSSTGVTSSTSFSASTGGFEGSYGDLYRSGSVYGDSTWRSGASDLDGSGSFGYGLGGIVSDDPVKSSEGYVGNYSVTNRQSNRGIAA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01100 477 MobiDBLite consensus disorder prediction 81 105 - -
Bva12g01100 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Bva12g01100 477 Gene3D - 105 185 IPR012677 -
Bva12g01100 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Bva12g01100 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Bva12g01100 477 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Bva12g01100 477 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Bva12g01100 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bva12g01100 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Bva12g01100 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bva12g01100 477 Gene3D - 6 88 IPR012677 -
Bva12g01100 477 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 477 - -
Bva12g01100 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bva12g01100 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Bva12g01100 477 SUPERFAMILY RNA-binding domain, RBD 104 206 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01100 Bva-Chr12 10838802 10842596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01100 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 7.81e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01100 K14411 - gmx:100794390 803.127