Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01080 ATGGATACTGCGCCGAGCTCTGAGTTGACAGAACCGGTGGTGGACATGCAGGTGGATGGCTCGCCGGCTTCCGCGAAAAGGCCGATTGAGAATGGTGGGGGTGAGGAATTGGATGGCCTGTCCAGGAAGAAGGCAAAGGTGGGGGACAGCGGGAGATTGAAGAGAGTGGCGGAAATTGTGTTGGTTTTGTCAACAATGGCGGCGATGAGGGGTGGGAGGAAGCCGACTGAGGTGGAGAATGAGCTGATGATGGAGGCTCGGGCCAAGTTAGCGGATTTGTGTCAAGAGTTGGCTCCAAAGGATATTGTGGCCAGGGAAGCTATTGGGACTGTGATTGAGGATCTGGGGTTGAATGGGAAGATTAAAGACCAGAGGTTAGGATTTAGAGCTCCCAAGATATCGATAGCTGAGAGATTTTCACACGCCAAGGGGAAGATGGAagaatcaaagaaattttctgCACATTCTGCAACATATAATCCTCAGTCATTGCAAACAAGCACTGGGGGAACAGTTGAAAATCGTGTGCCATCCCATGCTATTCGAATGTTCCCATCAGATAAATCGAACCAAGCAGCAATCTTTTCAGCATCTACCCTAGCTTCTACGCCTGTGCCTCAGGTTTCTGCAGCTTTGCACCATCCATCTAGCAACGAAGTAAGACCACCTATGGTTACTAGTGGAATGTCAAGCAGCCACTTGGGGAGAAATTCATCGTTGGCATTGCCAAAAGTTGAACAACCCCAGTTCAAAGTTGATGGAGGATTAAATGGGCCTTCTTATGTGTTACAAGTTCAAGCAAATTCTTCTGCAAGCCAACCTAATGCTCCAACATGGTCAATACAGTCCCAATCTGCAAGAAGTGGACCTGAAAATAAGGTACCCGGTCATGCCTCTGTTAAGGTTGAGGGGATGGGTGACCCTACTTTGTCACGGGTAGCTCCACAATTAGCTAGAGATCAGAACTTTAGACCATTTATTACCCAAACAACACCTGGGAATTTGTCAAGCGTGCAGCAGCCATTGCCTGGGATGAATATTGTCCAACCTCCTTTGCTTACAAATAATCACTCtgaaattgcaaagattgtCCAGAAATTTTTACAACCTAAGCTTCCTGAGCATCCCACATGGACTCCTCCATCAAGGGATTATATGAGTAAGGCCACAACTTGCCAAATGTGTAATCTTACTGTCAATGAGGTGGATACTGTTCTTCTTTGTGATGCTTGTGAGAAAGGATTTCACTTGAAGTGCCTGCAGTCATCAGTCTTGAGGGGAATTCCTAGGGGTGAGTGGCACTGCCTGAGGTGTTTGACTTTAAGCAACGGAAAGCCTTTGCCCCCAAAATATGGTCGTGTAATGAGATCATCAAACACACCAAATACACAACCAAAAGTGCTCTCCATTACAGGTGGAATTCAACCTTCttcagagaagaaagaaggagtATTAGACACAAAGGTTAGCCTGCAGAAGCTGACAACAAATGGGAGCTCTGCTCCATCTAAAGCCTTTGGCAACAGCTCTGCTGAGCTGCCATCTAACTTGAAGACCCTAGAtacaagagaaataaaaggggACACCATAACATCCAGCACCAAACATATGGATGAGAAGCCTGATCCAAGTATATCAAAGAAATCCCTTGATGCAGCTTCTAATTCTTCTGTTGGCTTGCTGGGTGAAATTTCTGCTCAACGAATAAAAAGTTCTGAGGTGTCTACCTCTAAAGAGGGAGAAACTGCTTCAGAAACAGAGACTCTCCCTAAATTGTCTGAGCCAAATCTACAAGTTGAGCAGACGGTATTGCAAGACAATTCTGAAGGAATCTCTAGTTTGATGTATAATAACCAAAACGAATCTCTAGGAGAAGGTCTGAGATATGATATCCAGCGAGATGACAAAGATGTTGCTCTTGGTAACTCTGATGGAAGTTCTGGAATTAACACTGAGGGTAGACAGTGCTCTCAATTACCTTCAAATGGGTCACATGTTGTAGAATGGATTGGTGATGTTATACAACTCGTGAATGAGAAAAAGTTTTACCAATCTTGCTGTGTTGATGGAGTAACATATAGACTGCAGGATCATGCTCTTTTTATTTCCAGCCTTGGAAAATTAGAACCTTCTAAACTTCAGTCTATGTGGGAAGATAGCAAAACTGGATTAAGGTTGGTTAATGTGACAAAATGCTACTTTCCTGGTGATTTGCCTGGGAATATTGCCCATCCATGCATTTCTGAAGTCAATGAGGTGTATGAATCTAATAGTGATAGAACTGAAACGGCTGCCTCAATTCGAGGCCCATGTGAAGTCCTCccttcttataaatttaaacaagaaaCTGATAGACGAAATCAGTTAGGACTTGAGGCAAGTGCTAGACTACAGCCAATTTTCCTTTGCAGATGGTTCTACGATGAAGTCAAAAAGCTATTTCAACCTGTTACCAGTTA 2459 0.4282 MDTAPSSELTEPVVDMQVDGSPASAKRPIENGGGEELDGLSRKKAKVGDSGRLKRVAEIVLVLSTMAAMRGGRKPTEVENELMMEARAKLADLCQELAPKDIVAREAIGTVIEDLGLNGKIKDQRLGFRAPKISIAERFSHAKGKMEESKKFSAHSATYNPQSLQTSTGGTVENRVPSHAIRMFPSDKSNQAAIFSASTLASTPVPQVSAALHHPSSNEVRPPMVTSGMSSSHLGRNSSLALPKVEQPQFKVDGGLNGPSYVLQVQANSSASQPNAPTWSIQSQSARSGPENKVPGHASVKVEGMGDPTLSRVAPQLARDQNFRPFITQTTPGNLSSVQQPLPGMNIVQPPLLTNNHSEIAKIVQKFLQPKLPEHPTWTPPSRDYMSKATTCQMCNLTVNEVDTVLLCDACEKGFHLKCLQSSVLRGIPRGEWHCLRCLTLSNGKPLPPKYGRVMRSSNTPNTQPKVLSITGGIQPSSEKKEGVLDTKVSLQKLTTNGSSAPSKAFGNSSAELPSNLKTLDTREIKGDTITSSTKHMDEKPDPSISKKSLDAASNSSVGLLGEISAQRIKSSEVSTSKEGETASETETLPKLSEPNLQVEQTVLQDNSEGISSLMYNNQNESLGEGLRYDIQRDDKDVALGNSDGSSGINTEGRQCSQLPSNGSHVVEWIGDVIQLVNEKKFYQSCCVDGVTYRLQDHALFISSLGKLEPSKLQSMWEDSKTGLRLVNVTKCYFPGDLPGNIAHPCISEVNEVYESNSDRTETAASIRGPCEVLPSYKFKQETDRRNQLGLEASARLQPIFLCRWFYDEVKKLFQPVTS 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01080 819 MobiDBLite consensus disorder prediction 456 483 - -
Bva12g01080 819 ProSitePatterns Zinc finger PHD-type signature. 392 438 IPR019786 -
Bva12g01080 819 Pfam PHD-finger 392 439 IPR019787 -
Bva12g01080 819 MobiDBLite consensus disorder prediction 495 517 - -
Bva12g01080 819 MobiDBLite consensus disorder prediction 1 43 - -
Bva12g01080 819 MobiDBLite consensus disorder prediction 519 546 - -
Bva12g01080 819 SMART PHD_3 391 439 IPR001965 -
Bva12g01080 819 MobiDBLite consensus disorder prediction 569 593 - -
Bva12g01080 819 MobiDBLite consensus disorder prediction 456 476 - -
Bva12g01080 819 MobiDBLite consensus disorder prediction 268 290 - -
Bva12g01080 819 SUPERFAMILY FYVE/PHD zinc finger 383 448 IPR011011 -
Bva12g01080 819 CDD BAH 690 818 - -
Bva12g01080 819 MobiDBLite consensus disorder prediction 206 236 - -
Bva12g01080 819 ProSiteProfiles BAH domain profile. 691 818 IPR001025 GO:0003682
Bva12g01080 819 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 818 - -
Bva12g01080 819 Gene3D - 670 819 IPR043151 -
Bva12g01080 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 459 IPR013083 -
Bva12g01080 819 ProSiteProfiles Zinc finger PHD-type profile. 389 441 IPR019787 -
Bva12g01080 819 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 818 - -
Bva12g01080 819 MobiDBLite consensus disorder prediction 268 296 - -
Bva12g01080 819 MobiDBLite consensus disorder prediction 495 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01080 Bva-Chr12 10742559 10747568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01080 391 439 C2H2 Transcription Factor Family AT3G01460 38.776 3.98e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva12g01080 PHD 8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01080 - - gmx:100807139 991.104