Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01034 ATGACAAGCAGTGTTGAGATGGCGAATGAGGAAAACAGGTCAGTTGAGAAAAACTGTGGCGGCGACGGAGCAGGAGTGAGCGGGAAAATGGAGGAGGCGGTTACACTAAAAAAGGGTCCTTGGACGGCGGCGGAAGATGCCGTTCTCATAGAATATGTGAAGAAAAACGGCGAAGGTAACTGGAACGCGGTGCAGAAGAACACGGGGTTGGCTCGTTGTGGTAAGAGCTGTAGGCTGAGATGGGCTAACCATTTGCGACCCAATTTGAAAAAAGGTGCATTCTCTCCGGAGGAAGAGAAGCTCATTCTCCAGCTTCATGCCAAGTATGGCAACAAATGGGCTAAAATGGCTACTCTGTTACCTGGGAGAACAGACAACGAAATCAAGAATTTTTGGAACACGAGGGTGAAGCGCCGGCAACGGCAAGGCCTGCCGCTTTATTCCGACGAATTGGAGTACCCTTCAACGCCCACCACGCCGGCGACCCCTTCCACTCCGACCACCCCAACCGCACCTACCACCACAAAATTCGATTTTCTTAAACAGAACCACTACCACCACCACTCTCTGCCTCCAACTCCACCCCCTCATTCTCCCCTCTCTTCACCCATTGAGCATAAACCCACCTTCAACGCTTTCCCATCCTTCGACTCTTCTTCTCTCCCACTCTCCTTCACCTTTCAACGGCCCCCTCCAGTTCTCTGCAACCCACTCCGTTTCAAGCGTTACCGCACCTCTCCGAGGTACCCTCTTCAGGTTTCTCCCACACCCACAAGCTCAGCCACacttgaaaatcaaaatcatactTCGAATGCTGCCCAATTGATTGATGTTGACGCATTCAAGTTCCCTCTTCAACTCAACCCCGCTACCTCTCAGTTTTTTCAAACCCCATTATTAGATTCTGACCAAAGGGTCTCGTCATCCCCTTCGGTTTTTCCAACCAGATTGGAGCTCCCTTCAAACCAATTTTCCCAACCACTAGAACCAGAGATTAAGTTTGATATGTTAATGAACGACCCTGCTTCCCACACCTCGAGTGACTTTCTTGGAGATATTCTAATGGAAGCAGAGGCATTTGCATCAGGGCACACTTCAAATAAACGAAGCTACTCCAACgtgaatgaagaaaattatctGCTCGATGATTTGCCTCTTAGCTCACTTAACTGGTCTTCTACCACTTCAGGACTAAGACCAAGGGAAGAAACACAGGACTTGAGCAAATGCACAAGCGAAGACTTGTCATTGTTCGACGAAATGCCTTCCACATTGCAGATTCCAGATTGGCAGTGGCACAATGAAAgcgcagcagcagcagcaggaATGTCCAATGTACAAACATCTAATAGTATCATGCCACATGATAATTTAGGACTTGATATGAAGCCCATGGCTTCACCGTTTCCCATCACCACCACAACAAACCATAATGAAAGCACTAGCTACTACACTTGGGACAATTTACCTGGACTCTGCTG 1481 0.4673 MTSSVEMANEENRSVEKNCGGDGAGVSGKMEEAVTLKKGPWTAAEDAVLIEYVKKNGEGNWNAVQKNTGLARCGKSCRLRWANHLRPNLKKGAFSPEEEKLILQLHAKYGNKWAKMATLLPGRTDNEIKNFWNTRVKRRQRQGLPLYSDELEYPSTPTTPATPSTPTTPTAPTTTKFDFLKQNHYHHHSLPPTPPPHSPLSSPIEHKPTFNAFPSFDSSSLPLSFTFQRPPPVLCNPLRFKRYRTSPRYPLQVSPTPTSSATLENQNHTSNAAQLIDVDAFKFPLQLNPATSQFFQTPLLDSDQRVSSSPSVFPTRLELPSNQFSQPLEPEIKFDMLMNDPASHTSSDFLGDILMEAEAFASGHTSNKRSYSNVNEENYLLDDLPLSSLNWSSTTSGLRPREETQDLSKCTSEDLSLFDEMPSTLQIPDWQWHNESAAAAAGMSNVQTSNSIMPHDNLGLDMKPMASPFPITTTTNHNESTSYYTWDNLPGLC 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01034 493 SUPERFAMILY Homeodomain-like 36 132 IPR009057 -
Bva12g01034 493 CDD SANT 40 85 IPR001005 -
Bva12g01034 493 PANTHER TRANSCRIPTION FACTOR MYB28-LIKE 155 493 - -
Bva12g01034 493 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 18 256 - -
Bva12g01034 493 CDD SANT 93 134 IPR001005 -
Bva12g01034 493 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 155 493 - -
Bva12g01034 493 SMART sant 37 87 IPR001005 -
Bva12g01034 493 SMART sant 90 138 IPR001005 -
Bva12g01034 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Bva12g01034 493 MobiDBLite consensus disorder prediction 149 171 - -
Bva12g01034 493 PANTHER TRANSCRIPTION FACTOR MYB28-LIKE 18 256 - -
Bva12g01034 493 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Bva12g01034 493 ProSiteProfiles Myb-like domain profile. 33 85 IPR001005 -
Bva12g01034 493 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Bva12g01034 493 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Bva12g01034 493 MobiDBLite consensus disorder prediction 1 26 - -
Bva12g01034 493 Gene3D - 93 139 - -
Bva12g01034 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Bva12g01034 493 Gene3D - 37 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01034 Bva-Chr12 10521486 10523606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01034 36 153 MYB Transcription Factor Family AT2G32460 77.966 4.75e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g01034 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01034 - - lja:Lj6g3v0869180.1 475.707