Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01030 ATGGGTTGCTGTttaaccaaagaaaaaggttcTTCAGAGCGGGAATACATTGGTTACAGATCAGCTGGGGCTGCTGCGGTGCACCATCCGAAGACCCATGAACCCTTTGTTAATCAATCAAAAGCTCCAGCTCCACAACCTTATCATCTGCCTCAGAAACAGGCTGCGCCACCGTCACCGTGGAGGCCCTCAGTTCCTGGCCCTAGCCCAAAGCATGTTCACAAGTCAGATACAATTCTGgataaaccatttgaagatGTTAAACAGTACTATAGCATTGGGAAAGAACTGGGTAGAGGTCAATTTGGGGTAACTTACCTCTGCACTGAGAATTCAACTGGGAGACAATATGCTTGCAAGTCCATTTCAAAGAGGAAACTTGTGAGTAAAGCTGATAAGGAGGATATTAAGAGGGAAATTCAGATTATGCAGCATTTGAGTGGACAACCCAACATTGTTGAGTTCAAAGGAGCTTATGAAGATAAGCAATCAGTTCATCTTGTTATGGAGCTATGTGCAGGTGGGGAGCTGTTTGATCGGATTATTGCGAAGGGGCAGTACAGTGAAAGAGCTGCAGCTTCAATATGCAGACAAATTGTTAATGTTGTTCATATGTGCCACTTTATGGGTGTGATGCATAGGGATCTGAAGCCTGAGAATTTCTTATTGTCCAGTAAGGGTGAAAAAGCACTTCTAAAAGCCACAGATTTTGGTTTGTCGGTTTTCATCGAAGAAGGAAAGGTGTATCGGGATATAGTTGGGAGTGCTTATTATGTTGCCCCAGAAGTTCTGCGTCGCAGATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATTTTGTATATCTTACTCAGCGGTGTACCTCCTTTCTGGGCTGAGACGGAAAAGGGAATCTTTGATGCCATCTTGCAAGGACATATCGACTTTGAGAGCGACCCATGGCCAAGCATATCAAACAGTGCCAAGGACCTTATTCGTAAGATGCTGACACAGGACCCAAAGAAACGCATTACATCTGCTCAGGTTTTAGATCATCCGTGGATTAGAGAAGACGGAAACGCCTCTGACAAGCCAATAGACAGTGCAGTCCTTTCTAGAATGAAGCAATTCAGAGCTATGAATAAACTGAAGAAGCTCGCCCTGAAGGTCATTGCTCAAAATCTTTCTGAAGAAGAGATCCAAGGGTTGAAGCAAATGTTTACAAACATAGACACTGACAATAGTGGTTCAATAACCTATGAAGAACTAAGGGCAGGATTGCAAAAAATTGGCTCAAAGCTCACAGAGGCTGAAGTACGGCAGCTTATGGACGCTGCCGATGTAGATGGAGACGGCACAATTGACTACATAGAATTTATCACTGCTACAATGCATAGACATAGGCTAGAAAGGGATGATCATCTTTATAAGGcctttcaatattttgataaagataACAGTGGTTTTATTACTAGAGATGAACTAGAAACAGCCATGAAAGAATATGGAATGGGTGATGAAGCCACAATCAGGGAAATTATATCAGAAGTTGATACAGATCATGATGGTAGAATCAACTATGAAGAATTCTGCACAATGATGAGGAGTGGAACCCAACAAGGCAAGCTATTCTA 1616 0.4152 MGCCLTKEKGSSEREYIGYRSAGAAAVHHPKTHEPFVNQSKAPAPQPYHLPQKQAAPPSPWRPSVPGPSPKHVHKSDTILDKPFEDVKQYYSIGKELGRGQFGVTYLCTENSTGRQYACKSISKRKLVSKADKEDIKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGQYSERAAASICRQIVNVVHMCHFMGVMHRDLKPENFLLSSKGEKALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILQGHIDFESDPWPSISNSAKDLIRKMLTQDPKKRITSAQVLDHPWIREDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAQNLSEEEIQGLKQMFTNIDTDNSGSITYEELRAGLQKIGSKLTEAEVRQLMDAADVDGDGTIDYIEFITATMHRHRLERDDHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDEATIREIISEVDTDHDGRINYEEFCTMMRSGTQQGKLF 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01030 538 CDD EFh 471 529 IPR002048 GO:0005509
Bva12g01030 538 Gene3D Transferase(Phosphotransferase) domain 1 177 357 - -
Bva12g01030 538 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01030 538 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Bva12g01030 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 533 - -
Bva12g01030 538 Pfam Protein kinase domain 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01030 538 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Bva12g01030 538 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Bva12g01030 538 SMART efh_1 432 460 IPR002048 GO:0005509
Bva12g01030 538 SMART efh_1 396 424 IPR002048 GO:0005509
Bva12g01030 538 SMART efh_1 468 496 IPR002048 GO:0005509
Bva12g01030 538 SMART efh_1 503 531 IPR002048 GO:0005509
Bva12g01030 538 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Bva12g01030 538 SUPERFAMILY EF-hand 388 528 IPR011992 -
Bva12g01030 538 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Bva12g01030 538 CDD STKc_CAMK 91 348 - -
Bva12g01030 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Bva12g01030 538 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Bva12g01030 538 ProSiteProfiles EF-hand calcium-binding domain profile. 500 534 IPR002048 GO:0005509
Bva12g01030 538 ProSiteProfiles Protein kinase domain profile. 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01030 538 Pfam EF-hand domain pair 397 457 IPR002048 GO:0005509
Bva12g01030 538 Pfam EF-hand domain pair 467 529 IPR002048 GO:0005509
Bva12g01030 538 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Bva12g01030 538 Gene3D - 358 533 - -
Bva12g01030 538 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Bva12g01030 538 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 56 533 - -
Bva12g01030 538 MobiDBLite consensus disorder prediction 27 77 - -
Bva12g01030 538 MobiDBLite consensus disorder prediction 50 67 - -
Bva12g01030 538 SUPERFAMILY Protein kinase-like (PK-like) 90 356 IPR011009 -
Bva12g01030 538 Gene3D Phosphorylase Kinase; domain 1 93 176 - -
Bva12g01030 538 CDD EFh_PI-PLC 397 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01030 Bva-Chr12 10497972 10501589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01030 67 538 EF-hand Containing Proteins AT3G20410 81.895 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bva12g01030 Pkinase 1.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01030 K13412 - gmx:100794852 916.376