Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01027 ATGAGCCAAAGTGATACCAGAGAGAAGATCATCACTTGCAAAGCCGCGGTGGCGTATGGACCCGGAGAGCCATTGGTGGTAGAGCAAGTTCAAGTTCACCCTCCTCAGAAGTTGGAAGTTAGAATCAAGATCCTCTTCACTTCCATTTGTCACAGTGATCTAAGTGCTTGGCAAGGCGAGAATGAGGCTCAACGTGCTTATCCTCGAATTTTTGGCCATGAAGCTTCTGGAATTGTGGAGAGCGTGGGAGAAGGCGTTGAGGACCTCAAAGAAGGGGACTACGTGGTGGCCATATTCAATGGAGAGTGTGGTGAATGCAGATACTGTAAGTGTGAGGTGACAAACAAGtgcgagaagtttgaggtGAATCCGATGAAGAAGGTGATGGTTGGCGACGGAAAGTGCAGATTCGCCACCGCGGACGGCAAACCCATATACCATTTCCTGAATACCTCAACTTTCAGCGAGTACACGGTTTTGGACTCAGCCTGCGTGGTCAAACTTCCGGCTGCCACCGAGGTTGACCTGATCAAAAAGCTCACCTTGCTTAGTTGCGGTGTCTCCACCGGTGTTGGGGCAGCCTGGAATACTGCCGAAGTGCATTCTGGTTCAACGGTGGCTGTCTTTGGTTTGGGCTCTGTGGGGCTTGCGGTTGCAGAAGGGGCACGAGCCAGAGGTGCATCCAAAATAATAGGTGTCGATATTAACCCCgacaaatttatcaaagggcGAGCACTGGGAATCACAGACTTCATTAATCCAAGAGATGAAGAGAAACCTGCATACGagAGAATAAGGGACTTAACAGGAGGAGGCGTAGATTATAGCTTTGAATGCGCAGGAGACGTCGACGTTCTCCGCGATGCCTTCTTGTCTGCACACGAGGGTTGGGGATTAACCGTTGTATTAGGAATTCATCCAACACCAAGAATGCTTCCCATCCATCCAATGGAGTTGTTTCAAGGCCGCAGAATAGTGGCATCAGTCTTTGGAGGCTTCAAAGGGAAAACCCAATTGCCTCACTTTGCTCAACAATGCATCAATgggGTAGTGAAGCTGGACGAGTTCATCACTCATGAGCTTCCCTTCGACCAGATAAACGAAGCATTTCAACTTCTGATAGCCGGAAAGTCACTGAGATGTCTCCTACATTTCTA 1157 0.4745 MSQSDTREKIITCKAAVAYGPGEPLVVEQVQVHPPQKLEVRIKILFTSICHSDLSAWQGENEAQRAYPRIFGHEASGIVESVGEGVEDLKEGDYVVAIFNGECGECRYCKCEVTNKCEKFEVNPMKKVMVGDGKCRFATADGKPIYHFLNTSTFSEYTVLDSACVVKLPAATEVDLIKKLTLLSCGVSTGVGAAWNTAEVHSGSTVAVFGLGSVGLAVAEGARARGASKIIGVDINPDKFIKGRALGITDFINPRDEEKPAYERIRDLTGGGVDYSFECAGDVDVLRDAFLSAHEGWGLTVVLGIHPTPRMLPIHPMELFQGRRIVASVFGGFKGKTQLPHFAQQCINGVVKLDEFITHELPFDQINEAFQLLIAGKSLRCLLHF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01027 385 Gene3D - 190 328 - -
Bva12g01027 385 Pfam Zinc-binding dehydrogenase 214 332 IPR013149 -
Bva12g01027 385 PANTHER ALCOHOL DEHYDROGENASE 7 384 - -
Bva12g01027 385 SUPERFAMILY GroES-like 335 385 IPR011032 -
Bva12g01027 385 SUPERFAMILY GroES-like 7 209 IPR011032 -
Bva12g01027 385 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 7 384 - -
Bva12g01027 385 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Bva12g01027 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 180 349 IPR036291 -
Bva12g01027 385 Gene3D - 16 380 - -
Bva12g01027 385 Pfam Alcohol dehydrogenase GroES-like domain 39 166 IPR013154 -
Bva12g01027 385 SMART PKS_ER_names_mod 20 379 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01027 Bva-Chr12 10479414 10482384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01027 39 374 Monolignol Biosynthesis Gene Families AT2G21890 26.062 4.18e-13 68.2