Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01021 ATGAGTCGCCTCATTTTAGCTTCATACCAGAATACTCAAGGAAACCAGGGCGAGAATGATCCTACTAATACAACATTATTTGTTGGGAATTTGCACCCTAGTGTCTCAGATGACTTGTTGAGGCAAGTCTTTGGCCAATATGGTGAACTAGTTCATGTGAAAATACCTGCAGGAAAGTGCCGGGGTTTTGTCCAGTTTGCTAATAGTTATGGTTTCTGTATATCATGTGCTGAGCAAGCATTATCAGTGTTGAATGGAACACCATTAGTAGGACAGAGCATTAGACTTTCATGGGGGCGTAACCCATCAAACACGCAGTCTCTGATAGATCAGATCCTAATATGGTTTATGGAGGTTACCCTCAATATGGGAATTACCAGCAGCCTCAACAGTGAGCGCTGTGCTGAATTTGGAAGCAGGCCAATCCTTGTTCTATTGCCCAAGCAGCTAATTACTTTGCCCCTTTA 467 0.4304 MSRLILASYQNTQGNQGENDPTNTTLFVGNLHPSVSDDLLRQVFGQYGELVHVKIPAGKCRGFVQFANSYGFCISCAEQALSVLNGTPLVGQSIRLSWGRNPSNTQSLIDQILIWFMEVTLNMGITSSLNSERCAEFGSRPILVLLPKQLITLPL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01021 155 SUPERFAMILY RNA-binding domain, RBD 11 106 IPR035979 GO:0003676
Bva12g01021 155 SMART rrm1_1 25 97 IPR000504 GO:0003723
Bva12g01021 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 94 IPR000504 GO:0003723
Bva12g01021 155 Gene3D - 7 108 IPR012677 -
Bva12g01021 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Bva12g01021 155 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 111 - -
Bva12g01021 155 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 4 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01021 Bva-Chr12 10443779 10445798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01021 6 114 Eukaryotic Initiation Factors Gene Family AT4G34110 32.500 1.26e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01021 - - cit:102613263 155.606