Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01020 ATGGTCCCTTATGGCTTGTTTGGCAAAAGCACAACTACCCAGAAGCTAGTTGGCATTCTAGAAAGAATGTTAATACAATTGGAGAGTTGTCAAGTGTGGGAGAAAGTGGAGGAAAGGAACAcagagaggaagaagatgcaGCGAGCGTGctattttttttttccctcaccAGCACCCGCAGTTGTCCCACCTAGGATGCCCCCCATGTCGTCAGTTCCATCGGATCAGCAGAACCAGCAGTACGCGCCGAGGCCGTCGCAGCAACAGTGGATGACGATGCAGTCACGGCATCAGCAGCAAGAGCCTCCACCGGCGGGGTGGGCTCCGCAATCATTTCCTCCACCTCTGGCAGTCCATATGCTGCAGCCGTTAGCGCAGCAATATGCCACCGGGCAGAATGCTAGCTCTGGTGATGTCAGGTTGCTCTGGATTGGTGACTTGCAGCCGTGGATGGATGAAAACTACCTGATCAACTGCTGCGCTCATACTGGCGAGGTTATTTCTGTGAAGGTCATTCGTAATAAGCAAACTGGCATGCCTGAGGGTTATGGTTTCGTTGAGTTTAGAACACGTGCTGCTGCAGAGACAATGTTGCAGACATACAATGGCACGTTGATGCCAAATTCTGATCAGAATTTTAGATTGAACTGGGCCATACATGGTCCTGGTGAGAAGCGACAAGATGACAGTCAGGACTATACTATCTTTGTTGGTGATTTGGCTGCCGATGGTCAAAGGGCTATGGATTTGTTAGATTTGGGGATGAAAGTCAACAACTTCGTGCATTG 788 0.4772 MVPYGLFGKSTTTQKLVGILERMLIQLESCQVWEKVEERNTERKKMQRACYFFFPSPAPAVVPPRMPPMSSVPSDQQNQQYAPRPSQQQWMTMQSRHQQQEPPPAGWAPQSFPPPLAVHMLQPLAQQYATGQNASSGDVRLLWIGDLQPWMDENYLINCCAHTGEVISVKVIRNKQTGMPEGYGFVEFRTRAAAETMLQTYNGTLMPNSDQNFRLNWAIHGPGEKRQDDSQDYTIFVGDLAADGQRAMDLLDLGMKVNNFVH 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01020 262 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 82 244 - -
Bva12g01020 262 MobiDBLite consensus disorder prediction 71 105 - -
Bva12g01020 262 SUPERFAMILY RNA-binding domain, RBD 109 224 IPR035979 GO:0003676
Bva12g01020 262 SMART rrm1_1 141 216 IPR000504 GO:0003723
Bva12g01020 262 CDD RRM1_SECp43_like 142 221 - -
Bva12g01020 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 220 IPR000504 GO:0003723
Bva12g01020 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 208 IPR000504 GO:0003723
Bva12g01020 262 MobiDBLite consensus disorder prediction 64 109 - -
Bva12g01020 262 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 244 - -
Bva12g01020 262 Gene3D - 140 219 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01020 Bva-Chr12 10441154 10446033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01020 142 261 Eukaryotic Initiation Factors Gene Family AT2G36660 25.833 1.89e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01020 - - jre:108993632 237.654